BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3347.p
         (228 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312682|ref|YP_003776774.1| iron-regulated protein [Herbasp...   434   e-123
gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase [Herbaspi...   234   5e-63
gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase [Herbaspi...   196   2e-51

>gi|300312682|ref|YP_003776774.1| iron-regulated protein
           [Herbaspirillum seropedicae SmR1]
          Length = 228

 Score =  434 bits (1116), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/228 (90%), Positives = 216/228 (94%)

Query: 1   MLITIPQLLDPQALQAVRKLLNEAGEAWVDGRVTAGYQGAPVKFNQQIDERSELAQRCQH 60
           MLITIPQLLD QALQ VR LL +AGEAWVDGRVTAGYQGAPVKFNQQIDE SE+A +CQ 
Sbjct: 1   MLITIPQLLDTQALQTVRSLLEQAGEAWVDGRVTAGYQGAPVKFNQQIDEHSEVALQCQR 60

Query: 61  IIVSTLERHPRFISAALPNLIYPPMFNRYGQGMNFGAHVDGSVRIHPHNGRKLRTDVSAT 120
           IIVS LERHPRFISAALPNLIYPPMFNRYG+GM+FGAHVDGSVRIHPHNGRKLRTDVSAT
Sbjct: 61  IIVSALERHPRFISAALPNLIYPPMFNRYGEGMHFGAHVDGSVRIHPHNGRKLRTDVSAT 120

Query: 121 LFLADPADYDGGELQIEDTYGMHSVKLAAGDMVLYPATSLHTVTPVTRGVRMGCFFWVQS 180
           LFLADP DYDGG+LQI+D+YG HSVKLAAGDMVLYPATSLHTVTPVTRGVR+ CFFWVQS
Sbjct: 121 LFLADPGDYDGGDLQIDDSYGAHSVKLAAGDMVLYPATSLHTVTPVTRGVRLACFFWVQS 180

Query: 181 LVRDDAQRQLLFEMDNAIQRLNQTEADALARRTLVGCYHNLLRQWSDT 228
           LVRDD QRQLLF+MDNAIQRLNQTEADALARRTLVGCYHNLLRQWSDT
Sbjct: 181 LVRDDGQRQLLFDMDNAIQRLNQTEADALARRTLVGCYHNLLRQWSDT 228


>gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  234 bits (597), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 116/228 (50%), Positives = 152/228 (66%), Gaps = 2/228 (0%)

Query: 1   MLITIPQLLDPQALQAVRKLLNEAGEAWVDGRVTAGYQGAPVKFNQQIDERSELAQRCQH 60
           M++ IP++L  + ++ +R  L  A   WVDGR T G QGA VK N+Q+ E S L  +   
Sbjct: 1   MMLHIPEVLSAEQVRHIRAELARAD--WVDGRATVGDQGARVKRNRQLPEHSPLGFKLGE 58

Query: 61  IIVSTLERHPRFISAALPNLIYPPMFNRYGQGMNFGAHVDGSVRIHPHNGRKLRTDVSAT 120
           II+  L ++P F +AALP    PP+FN Y  G ++G HVDGSVR  P+    +RTDVS+T
Sbjct: 59  IILEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVRNLPNAVGSIRTDVSST 118

Query: 121 LFLADPADYDGGELQIEDTYGMHSVKLAAGDMVLYPATSLHTVTPVTRGVRMGCFFWVQS 180
           LFL+DP +YDGGEL + DTYG H VKL AGD+++YP+TSLH V PVTRG R+  FFW QS
Sbjct: 119 LFLSDPEEYDGGELVVVDTYGTHEVKLPAGDLIVYPSTSLHRVEPVTRGARVCSFFWTQS 178

Query: 181 LVRDDAQRQLLFEMDNAIQRLNQTEADALARRTLVGCYHNLLRQWSDT 228
           +VRDD +R +LFE+D  I  L +   D      L G YHNLLRQW++ 
Sbjct: 179 MVRDDWKRSMLFELDRNIFGLREKIGDTEEVLGLTGHYHNLLRQWAEV 226


>gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  196 bits (497), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/228 (45%), Positives = 147/228 (64%), Gaps = 5/228 (2%)

Query: 1   MLITIPQLLDPQALQAVRKLLNEAGEAWVDGRVTAGYQGAPVKFNQQIDERSELAQRCQH 60
           M++ + Q+L    +   R LL +A   W+DGRVT+G     +K N+Q+ E+S  A   Q 
Sbjct: 1   MMLHLKQVLSTDEVTRARALLEQA--QWIDGRVTSGSLPDTLKQNRQLPEQSASAVPLQQ 58

Query: 61  IIVSTLERHPRFISAALPNLIYPPMFNRYGQGMN-FGAHVDGSVRIHPHNGRKLRTDVSA 119
           ++++ L R+  F SAALP  I  PMFNRYG G +  G HVD ++R  P +GR++RTDVS 
Sbjct: 59  MVLAALRRNTLFFSAALPRQIVTPMFNRYGAGGDHLGDHVDVAMRFMP-DGRRVRTDVSC 117

Query: 120 TLFLADPADYDGGELQIEDTYGMHSVKLAAGDMVLYPATSLHTVTPVTRGVRMGCFFWVQ 179
           TLFL++P +Y+GGEL + D +    +KL AGDM+LYPAT++H V PV  G+R   FFW +
Sbjct: 118 TLFLSEPEEYEGGELVVADHWEDRHIKLPAGDMLLYPATTIHRVEPVRTGIRYASFFWTE 177

Query: 180 SLVRDDAQRQLLFEMDNAIQRL-NQTEADALARRTLVGCYHNLLRQWS 226
           S+VR+  +RQLLF+MD  +  L ++  AD  A   L   YHNLLR W+
Sbjct: 178 SMVREGERRQLLFDMDCQLMSLRSRLAADDAAVVGLSATYHNLLRMWT 225


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,846
Number of extensions: 29790
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 228
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,231,600
Effective search space: 179813600
Effective search space used: 179813600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)