BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3342.p (1177 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 2016 0.0 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 191 3e-49 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 184 3e-47 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 177 5e-45 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 156 1e-38 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 2016 bits (5222), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1023/1167 (87%), Positives = 1077/1167 (92%), Gaps = 10/1167 (0%) Query: 14 ILKRQGKGAFSGLPLPPGPLIGFAVAILAVLLIALFTYEASVSRGEAASAVSHTMKVREQ 73 +LKRQGKGAFSG PLP GPLIGFAVAILAV+LIALFTYEASVSRG+AA+AVSHTMKVREQ Sbjct: 1 MLKRQGKGAFSGPPLPLGPLIGFAVAILAVVLIALFTYEASVSRGQAANAVSHTMKVREQ 60 Query: 74 LQAVVSTLKDAETSQRGFLLTGTESYLSPYNQARAALPGEIAKLRELLADNPDQLQRLAQ 133 LQ++VSTLKDAETSQRG+LLTGTESYLSPYNQARAALPGEIA+LR LLADNPDQLQRL+Q Sbjct: 61 LQSLVSTLKDAETSQRGYLLTGTESYLSPYNQARAALPGEIARLRALLADNPDQLQRLSQ 120 Query: 134 VERVVGDKLDELGETISRRRNGDTVGALAVVQSDRGKMFMDRVRVLTRDMEEQERDLLAS 193 +E + DKL EL ETI RR GD ALAVVQSDRGKM MDRVR L R+ME +ERDLLA+ Sbjct: 121 IEGITNDKLQELAETIDLRRKGDAAAALAVVQSDRGKMSMDRVRTLAREMEGEERDLLAA 180 Query: 194 RQSDWRGAVAFSSAVAWGGSGLLLVLIAAAAVTTSRDYRAREKQAWIRAGQMGLAERLQG 253 RQSDWR AV+FS+AVAWGGSGLLLVLI AAA+TTSRDYR REKQAWIRAGQMGLAERLQG Sbjct: 181 RQSDWRDAVSFSTAVAWGGSGLLLVLIVAAAMTTSRDYRQREKQAWIRAGQMGLAERLQG 240 Query: 254 EQRLSTLGENTLDFLTGYLNAQVGAIYLRNERGEFQRFAGYALEQVDEPSHAAQALHLRD 313 EQRL LG+NTL FLT YLNAQVGAIYLR++ G+F+RFA +AL+ D P + LH Sbjct: 241 EQRLDALGDNTLSFLTAYLNAQVGAIYLRSDGGDFERFASHALDDADGP----RTLH--S 294 Query: 314 GQGLLGQAAKLNRPMHVKEVPAHYLDISSALGQHAPRELLIVPAATDGTVQAVFELGFLR 373 GQGLLGQAAKLNR MHVK+VP YL ISSA+G+ PREL++VPA+ DG VQAVFELGFLR Sbjct: 295 GQGLLGQAAKLNRAMHVKDVPEDYLTISSAVGRRQPRELMVVPASADGMVQAVFELGFLR 354 Query: 374 QVRAEEEELLARLADQIAIAVRSSKDRTRLEELLEETQRQSEELQAQQEELRVNNEELEE 433 QVR EEEELLARL+DQIAIAVRSSKDRTRLEELLEETQRQSEELQAQQEELRVNNEELEE Sbjct: 355 QVRPEEEELLARLSDQIAIAVRSSKDRTRLEELLEETQRQSEELQAQQEELRVNNEELEE 414 Query: 434 QGQALKASQLRLETQQAELEETNAQLEEQTQLLELQKEDLAKTQVVLVEKATELERANQY 493 QGQALKASQLRLETQQAELEETNAQLEEQTQLLELQK+DLAKTQVVLVEKATELERANQY Sbjct: 415 QGQALKASQLRLETQQAELEETNAQLEEQTQLLELQKDDLAKTQVVLVEKATELERANQY 474 Query: 494 KSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDIL 553 KSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDIL Sbjct: 475 KSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDIL 534 Query: 554 DLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSLGFKVEVEPGVPLRMETDMQRL 613 DLSKMEAGKLDIV ESF ++KLA+EL ASF + AQQK LGFKVEVEPGVP RMETD+QRL Sbjct: 535 DLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRL 594 Query: 614 GQILKNLLSNAIKFTEKGEVSLRISLDAGGRIVFAVRDTGIGIGAEQHQFIFEAFRQADG 673 GQILKNLLSNAIKFTEKGEVSLRI DAGGRI FAVRDTGIGIG +QHQFIFEAFRQADG Sbjct: 595 GQILKNLLSNAIKFTEKGEVSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADG 654 Query: 674 STHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSIFTLSLPQVYRPEQAV---MRTA 730 STHRKYGGTGLGLSISRDLAHLLGGDI V SRLGEGSIFTLSLP +Y EQAV Sbjct: 655 STHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLPPLYSSEQAVSNTAPEP 714 Query: 731 LPVPAAAAATLQAAQVATAPDVRIPGPQVMPTPQKRLQDIAIDDDRDRIEAASRLILVIE 790 P AAAA+TLQAA VATAPDVRI PQ RLQ+I+IDDDRDRIE +SRLILVIE Sbjct: 715 TPAAAAAASTLQAAHVATAPDVRINRTPAAAAPQ-RLQEISIDDDRDRIETSSRLILVIE 773 Query: 791 DDAAFAMILRDLAHEMGFQCVVTLSANEGVAAAEMYRPSAILMDMNLPDFSGLGVLDQIK 850 DDAAFAMILRDLA EMGFQCVVT SANEGVAAAEMYRPSAILMDMNLPDFSGLGVLDQIK Sbjct: 774 DDAAFAMILRDLAREMGFQCVVTHSANEGVAAAEMYRPSAILMDMNLPDFSGLGVLDQIK 833 Query: 851 RNPRTRHIPVHVVSVADYSQEALERGAIGYALKPVQREELVGAIRKLEAKFLQGLRHVLV 910 RNP+TRHIPVHVVSVADYS EA+ERGAIGYALKPVQREEL+GAIRKLEAKFLQGLRHVLV Sbjct: 834 RNPKTRHIPVHVVSVADYSHEAMERGAIGYALKPVQREELIGAIRKLEAKFLQGLRHVLV 893 Query: 911 VEDDARQLDSIRQLLAGENINLVGVRTAADALARLRETTFDCMVMDLNLPDLSGYQLLEK 970 VEDDARQLDSIRQLLAGENINLVGVRTAADALARLR+ TFDCMVMDLNLPDLSGYQLLEK Sbjct: 894 VEDDARQLDSIRQLLAGENINLVGVRTAADALARLRQNTFDCMVMDLNLPDLSGYQLLEK 953 Query: 971 MAEQEHVAFPPVIVYTGRSLSAEEEQNLRRFSRSIIIKDARSPERLLDEVTLFLHQIETT 1030 MAEQEHVAFPPVIVYTGRSLSAEEEQNLRRFSRSIIIKDARSPERLLDEVTLFLHQ+ETT Sbjct: 954 MAEQEHVAFPPVIVYTGRSLSAEEEQNLRRFSRSIIIKDARSPERLLDEVTLFLHQVETT 1013 Query: 1031 LPPESQRLLKVARDRETVFEGRRILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQA 1090 LP ESQR+LKVARDRETVFEGRRILVVEDDVRNIFALSSVLEPKGMKV+IARNGREALQA Sbjct: 1014 LPAESQRMLKVARDRETVFEGRRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQA 1073 Query: 1091 LQRSQEQPGAPIDLVLMDIMMPEMDGLTAMREIRKQAIWKRLPIIALTAKAMKDDQEKCL 1150 LQRSQ++P APIDLVLMDIMMPEMDGLTAMREIRKQA+WKRLPIIALTAKAMKDDQEKCL Sbjct: 1074 LQRSQDKPDAPIDLVLMDIMMPEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCL 1133 Query: 1151 AAGANDYIAKPLDVEKLLSLVRVWMPK 1177 AAGANDYIAKPLDVEKLLSLVRVWMPK Sbjct: 1134 AAGANDYIAKPLDVEKLLSLVRVWMPK 1160 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 149/445 (33%), Positives = 225/445 (50%), Gaps = 59/445 (13%) Query: 460 EEQTQLLELQKEDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLL 519 E QT LL + E +T L E AN KS F+A MSHELRTPLNS L A++L Sbjct: 654 ERQTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQIL 713 Query: 520 ADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEEL 579 + + + I +G LL+LI+ +LD++K+EAGK+ + S+ + E++ Sbjct: 714 --HVDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQI 771 Query: 580 KASFVVMAQQKSLGFKVEVEPGVPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSLRISL 639 F A+QK L F+ + +P + D +RL QIL NLL NA+KFT+ G V+LR+ Sbjct: 772 VGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRY 831 Query: 640 DAGGRIVFAVRDTGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGD 699 A F V DTGIGI + + IF F ++ + R+ GTGLGL+ISR L H++GG+ Sbjct: 832 -AREIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGE 890 Query: 700 IEVQSRLGEGSIFTLSLPQVYRPEQAVMRTALPVPAAAAATLQAAQVATAPDVRIPGPQV 759 + VQS++G+GS F L ++Y PE V +P P+ Sbjct: 891 LSVQSQVGQGSSFHL---KIYLPE----------------------------VHVPRPR- 918 Query: 760 MPTPQKRLQDIAIDDDRDRIEAASRLILVIEDDAAFAMILRDLAHEMGFQCVVTLS-ANE 818 I ++D SR ILV++D A+ +L+D+ +GF T+S A+ Sbjct: 919 ----------IKLEDQMSGYAGPSRHILVVDDQASQRRLLKDMLMPLGF----TVSEADS 964 Query: 819 GVAAAEMY---RPSAILMDMNLPDFSGLGVLDQIKRNPRTRHIPVHVVSVADYSQEALER 875 G+A E P +L+D+ +P G V I+ + +P+ +VS A+ + ER Sbjct: 965 GLACMETLGHALPDLVLLDIAMPQMDGWSVARAIRARGLAQ-LPILLVS-ANAFENLHER 1022 Query: 876 G----AIGYALKPVQREELVGAIRK 896 + +KPV EL+G IR+ Sbjct: 1023 NEPPLVNDFVVKPVSYHELLGKIRQ 1047 Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 1052 RRILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVLMDIMM 1111 R ILVV+D L +L P G V A +G ++ L + DLVL+DI M Sbjct: 933 RHILVVDDQASQRRLLKDMLMPLGFTVSEADSGLACMETLGHALP------DLVLLDIAM 986 Query: 1112 PEMDGLTAMREIRKQAIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1171 P+MDG + R IR + + +LPI+ ++A A ++ E+ ND++ KP+ +LL + Sbjct: 987 PQMDGWSVARAIRARGL-AQLPILLVSANAFENLHERNEPPLVNDFVVKPVSYHELLGKI 1045 Query: 1172 R 1172 R Sbjct: 1046 R 1046 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 155/443 (34%), Positives = 223/443 (50%), Gaps = 44/443 (9%) Query: 486 ELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDL 545 E + AN+ KS FLA +SHE+RTP+N L L++LL ++ LS +Q +A +I A L Sbjct: 340 EADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMES---GLSSKQRDYADSIHGATGGL 396 Query: 546 LALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSLGFKVEVEPGVPLR 605 + +INDILD SK+E+GKLD+ +F +L +EL + Q+K + F + ++ L Sbjct: 397 VRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLS 456 Query: 606 METDMQRLGQILKNLLSNAIKFTEKGEVSLRISL--DAGG----RIVFAVRDTGIGIGAE 659 + D RL Q+L NLLSNAIKFT+ G V L +S D G R+ FA+ DTGIGI E Sbjct: 457 VVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPE 516 Query: 660 QHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSIFTLSLPQV 719 Q +F F QAD S R++GGTGLGL+IS++L L+GG I QS GE + F+ ++ Sbjct: 517 ALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSF---EI 573 Query: 720 YRPEQAVMRTALPVPAAAAATLQAAQVATAPDVR----------IPGPQVMPTPQKRLQD 769 PE + T P P + AA A + P P P + Sbjct: 574 LCPEAS---TPAPEPVSEAAAPAPATALATTAPALPPAAEAPGTLMPPDNAPQPPSNVDA 630 Query: 770 IAIDDDRDRIEAASRLILVIEDDAAFAMILRDLAHEMGFQCVVTLSANEGVAAAEMYRPS 829 A + A +R IL+ ED +LR L G C++ N G+ A E R Sbjct: 631 SAT--VLPSLLAGAR-ILMAEDTEINRQLLRILLARKG--CILQEVEN-GLQAVEAIRTG 684 Query: 830 A---ILMDMNLPDFSGLGVLDQIKRN------PRTRHIPVHVVSVADYSQEALERGAIGY 880 +LMD +P G +I+ + PRT I + ++ Q L+ G Y Sbjct: 685 HYDLVLMDCMMPIMDGYQATAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDY 744 Query: 881 ALKPVQREELVGAIRKLEAKFLQ 903 KP + VG ++ +E K+LQ Sbjct: 745 LSKPFTQ---VGLMQTVE-KWLQ 763 Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 9/134 (6%) Query: 1047 TVFEGRRILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVL 1106 ++ G RIL+ ED N L +L KG + NG +A++A++ DLVL Sbjct: 637 SLLAGARILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTGH------YDLVL 690 Query: 1107 MDIMMPEMDGLTAMREIRKQAIWK---RLPIIALTAKAMKDDQEKCLAAGANDYIAKPLD 1163 MD MMP MDG A EIR + R PIIALTA A++ D+++CL AG +DY++KP Sbjct: 691 MDCMMPIMDGYQATAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDYLSKPFT 750 Query: 1164 VEKLLSLVRVWMPK 1177 L+ V W+ K Sbjct: 751 QVGLMQTVEKWLQK 764 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 103/256 (40%), Positives = 149/256 (58%), Gaps = 8/256 (3%) Query: 465 LLELQKEDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQ 524 LL L +E+ A+T LV+ + A + FL+ MSHE+RTP+N+ L +A LL + Sbjct: 59 LLRLLREN-ARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTR- 116 Query: 525 GNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFV 584 L +Q FA+ I + + LL ++ND+LD SK++ GK+DI F ++K+ E + Sbjct: 117 --LDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALS 174 Query: 585 VMAQQKSLGFKVEVEPGVPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSLRIS----LD 640 A++K + ++ +P R+ D R+ QIL NLL NA+KFT GEV LR+ Sbjct: 175 FKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTS 234 Query: 641 AGGRIVFAVRDTGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDI 700 R+ F VRD+GIG+ + + +F F QAD S R+YGGTGLGLSI + L L+GG I Sbjct: 235 DHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSI 294 Query: 701 EVQSRLGEGSIFTLSL 716 V+S LG GS F L Sbjct: 295 GVESALGTGSCFWFEL 310 Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/112 (44%), Positives = 62/112 (55%), Gaps = 7/112 (6%) Query: 1052 RRILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVLMDIMM 1111 R IL+VED+V N L G DIA NG EAL+ L R + LVLMD M Sbjct: 476 RDILLVEDNVMNQKVAVYQLNAMGYAADIAANGLEALERLARHR------YALVLMDCQM 529 Query: 1112 PEMDGLTAMREIRK-QAIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPL 1162 P +DG R IR+ Q I+A+TA AM D+E+CL AG +DY+ KPL Sbjct: 530 PLLDGYETTRRIRRMQGELAHTTIVAMTANAMAGDRERCLEAGMDDYLTKPL 581 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 140/425 (32%), Positives = 211/425 (49%), Gaps = 36/425 (8%) Query: 480 LVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTIS 539 LV+ + E+AN KS FLA++SHE+RTP+N L + +LL + L +Q + Sbjct: 883 LVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLL--QRTQPLPAQQDYLDKAEI 940 Query: 540 SAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSLGFKVEVE 599 SA LL L+ND+LD SKM+A +L + ++F + + L A Q + + ++ Sbjct: 941 SA-KSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALD 999 Query: 600 PGVPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSLRIS-LDA-GGRIV---FAVRDTGI 654 P +P R+ D RL Q+L NL NA+KFT +G + + + LD GR V V DTGI Sbjct: 1000 PQLPRRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGI 1059 Query: 655 GIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSIFTL 714 GI A++ IF+AF QA+ ST R+YGGTGLGL+IS+ L L+GG ++V S G GS F Sbjct: 1060 GIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWF 1119 Query: 715 SLPQVYRPEQAVMRTALPVPAAAAATLQAAQVAT---APDVRIPGPQVMPTPQKRLQDIA 771 L Q+ + +V+ A AA LQAA AP+ P + LQ + Sbjct: 1120 DL-QLAVDDDSVLGPAAADDAARPQPLQAASHTAGSRAPETARSAPDA-----QCLQGVQ 1173 Query: 772 IDDDRDRIEAASRLILVIEDDAAFAMILRDLAHEMGFQCVVTLSANEGVAAA--EMYRPS 829 IL++ED+ + +L G Q S + GVA A Sbjct: 1174 --------------ILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFD 1219 Query: 830 AILMDMNLPDFSGLGVLDQIKRNPRTRHIPVHVVSV---ADYSQEALERGAIGYALKPVQ 886 +LMD+ +P G+ +I+ R +P+ ++ + Q +E G G+ KP+ Sbjct: 1220 LVLMDLQMPGMDGIEATRRIRGQYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPID 1279 Query: 887 REELV 891 L+ Sbjct: 1280 IATLI 1284 Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 4/124 (3%) Query: 1048 VFEGRRILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVLM 1107 +G +IL+VED+ N S +L G +V A +G + P DLVLM Sbjct: 1168 CLQGVQILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMAC----DPARHFDLVLM 1223 Query: 1108 DIMMPEMDGLTAMREIRKQAIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKL 1167 D+ MP MDG+ A R IR Q + LPI+A+TA A +D+++C+ AG +IAKP+D+ L Sbjct: 1224 DLQMPGMDGIEATRRIRGQYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPIDIATL 1283 Query: 1168 LSLV 1171 + ++ Sbjct: 1284 IPVL 1287 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,977,861 Number of extensions: 118029 Number of successful extensions: 970 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 879 Number of HSP's successfully gapped: 75 Length of query: 1177 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1081 Effective length of database: 1,165,310 Effective search space: 1259700110 Effective search space used: 1259700110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)