BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3341.p (283 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312676|ref|YP_003776768.1| protein-glutamate methyltransfe... 555 e-159 gi|300311031|ref|YP_003775123.1| chemotaxis protein methyltransf... 73 3e-14 gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransf... 69 4e-13 gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransf... 69 6e-13 gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis... 56 4e-09 >gi|300312676|ref|YP_003776768.1| protein-glutamate methyltransferase chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 555 bits (1430), Expect = e-159, Method: Compositional matrix adjust. Identities = 269/283 (95%), Positives = 278/283 (98%) Query: 1 MDAQINQALANRHFDIEMQLLLDAIYLKYHCDFRGYAGASLKRRLATAMIRFDCATLSQL 60 MDAQINQALANRHFDIEMQLLLDAIYLKYHCDFRGYAGASLKRRLATAMIRFDC TLSQL Sbjct: 1 MDAQINQALANRHFDIEMQLLLDAIYLKYHCDFRGYAGASLKRRLATAMIRFDCQTLSQL 60 Query: 61 QDRVLHDAAVFPALMDYLTVQVSEMFRDPSYFLALREKVVPLLRTYPSLKIWVAGCSSGE 120 QDRVLHDAAVFP LM+YLTVQVSEMFRDPSYFLALREKVVPLLRTYPSLKIWVAGCSSGE Sbjct: 61 QDRVLHDAAVFPLLMEYLTVQVSEMFRDPSYFLALREKVVPLLRTYPSLKIWVAGCSSGE 120 Query: 121 EVYSLAILLREEGLLERSIIYATDINQAALKKAEAGVYELDRIAGFTSNHQKAGARTSLS 180 EVYSLAILLREEGLLERSIIYATDINQ+ALKKAEAGVY+L+RIAGFT+NHQK+GARTSLS Sbjct: 121 EVYSLAILLREEGLLERSIIYATDINQSALKKAEAGVYDLERIAGFTNNHQKSGARTSLS 180 Query: 181 DYYTAAYGAVMFDKSLRKNVVFSDHSLATDSVFAEMHLVSCRNVLIYFNRHLQERALGLF 240 DYYTAAYGAV+FDKSLRKNVVFSDHSLATDSVFAEMHLVSCRNVLIYFNR LQERALGLF Sbjct: 181 DYYTAAYGAVVFDKSLRKNVVFSDHSLATDSVFAEMHLVSCRNVLIYFNRQLQERALGLF 240 Query: 241 RESLVRKGFLGLGSKESLRFSSHGPAFDEVVREDRIFQKKGEL 283 RESLVRKGFLGLGSKESLRFSSH AF+EVVREDRIFQKKG+L Sbjct: 241 RESLVRKGFLGLGSKESLRFSSHAVAFEEVVREDRIFQKKGDL 283 >gi|300311031|ref|YP_003775123.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 25/229 (10%) Query: 67 DAAVFPALMDYLTVQVSEMFRDPSYFLALREKVVPLL----RTYPSLKIWVAGCSSGEEV 122 D L + +TV + R+ F L ++P + R+ ++IW CSSGEE Sbjct: 62 DGKELQLLTNLMTVNETYFLREEYQFQCLVNSMLPEITRNRRSTAPIRIWCIPCSSGEEA 121 Query: 123 YSLAILL--REEGLLERSI-IYATDINQAALKKAEAGVYELDRIAGFTSNHQKAGARTSL 179 Y+LA+ L R G+ + + I ++DI+ L+KA+ G Y + ++ + Sbjct: 122 YTLAMYLMERWPGIDQWDVEIISSDIDTGVLRKAQLGRYSARSVQHVPADW--------M 173 Query: 180 SDYYTAAYGAVMFDKSLRKNVVFSDHSLATDS---VFAEMHLVSCRNVLIYFNRHLQERA 236 S Y+ +LR V F+ +LA + ++ CRN+LIYF+ ++ A Sbjct: 174 SKYFLRQGDEYQICDALRGAVEFTRVNLAKSQDTKAYRNFDVIFCRNLLIYFDDVSRKEA 233 Query: 237 LGLFRESLVRKGFLGLGSKESL-RFSS--HGPAFDEVVREDRIFQKKGE 282 F E+L GF+ LG ES+ R SS F E + ++QK E Sbjct: 234 AETFYEALNLNGFICLGHSESMSRISSLYRVRKFPEAI----VYQKTAE 278 >gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 277 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 12/189 (6%) Query: 75 MDYLTVQVSEMFRDPSYFLALREKVVPLLRTYPSLKIWVAGCSSGEEVYSLAILLREEGL 134 +D +T + FR+P +F + + +P L P L+IW A ++GEE Y+LA+LL Sbjct: 77 IDLITTNETYFFREPGHFDFVVGQWLPQLAQQPQLRIWSAASATGEEAYTLAMLLDHHRP 136 Query: 135 LERSIIYATDINQAALKKAEAGVYELDRIAGFTSNHQKAGARTSLSDYYTAAYGAVMFDK 194 ++A+DI+ L+ A +Y + R + + + +Y G + Sbjct: 137 GASWSVFASDISTRVLRFARRALYPMVRGQNIPRAYLRRYCLMGVGEY----EGHFLVQA 192 Query: 195 SLRKNVVFSDHSLA--TDSVFAEMHLVSCRNVLIYFNRHLQERALGLFRESLVR---KGF 249 LR V F+ +L + + L+ RNV+IYF+ E L + R+ + R G+ Sbjct: 193 DLRAKVQFAQRNLTRLDEHDDGQYDLIFLRNVIIYFD---CETKLQVLRDVIARLRPGGY 249 Query: 250 LGLGSKESL 258 L +G ESL Sbjct: 250 LVVGHSESL 258 >gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 68.6 bits (166), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 21/206 (10%) Query: 66 HDAAVFPALMDYLTVQVSEMFRDPSYFLALREKVVPLLRTYP-SLKIWVAGCSSGEEVYS 124 HD+ + A + LT ++ FR+ +F L + L+T IW + S+GEE Y+ Sbjct: 73 HDSEEWEAFTNALTTNLTSFFREAHHFPILAD----FLKTLKEPATIWCSAASTGEEPYT 128 Query: 125 LAILLREE-GLLERSI-IYATDINQAALKKAEAGVYELDRIAGFTSNHQKAGARTSLSDY 182 +A+ E G L + I ATDI+ L GVY ++RI + K + Sbjct: 129 IAMTACEAYGSLTPPVQIVATDIDTNVLATGSNGVYPMERIEKMSPERVK--------KF 180 Query: 183 YTAAYGA----VMFDKSLRKNVVFSDHSLATD--SVFAEMHLVSCRNVLIYFNRHLQERA 236 + G+ V LRK + F +L D + + ++ CRNV+IYF++ Q + Sbjct: 181 FLRGKGSHEGYVRVRPELRKLITFKQLNLLADGWPLSGQFDVIFCRNVMIYFDKPTQSKI 240 Query: 237 LGLFRESLVRKGFLGLGSKESLRFSS 262 L F + L G E+ + S Sbjct: 241 LSRFVPLMKPHALLFAGHSENFLYVS 266 >gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis proteins protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 82/202 (40%), Gaps = 36/202 (17%) Query: 73 ALMDYLTVQVSEMFRDPSYFLALREKVVPLLRTYPS--LKIWVAGCSSGEEVYSLAILLR 130 AL++ V + FRD LA+ L P+ ++I CS+GEE YSLA+ L Sbjct: 59 ALIELAVVPETWFFRDREAILAVARLASDKLAAQPAAVIRILSLPCSTGEEPYSLAMALL 118 Query: 131 EEGLLERS-IIYATDINQAALKKAEAGVYELDRIAG----FTSNHQKAGARTSLSDYYTA 185 + GL +I A DI +L+ A AG+Y + G F H + Sbjct: 119 DAGLTPGQFVIDAYDIRTRSLEIAAAGLYGRNSFRGQELAFRDRH------------FDL 166 Query: 186 AYGAVMFDKSLRKNVVFSD----------HSLATDSVFAEMHLVSCRNVLIYFNRHLQER 235 G + +R V F+ HS D +F CRNVLIYF R +Q + Sbjct: 167 EQGQWRLHERIRSQVRFAPGNLLAPDFLRHSQPYDFIF-------CRNVLIYFERDVQRQ 219 Query: 236 ALGLFRESLVRKGFLGLGSKES 257 + L + + +G E Sbjct: 220 VVQLLASVMKPDALIFVGPAEG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 782,846 Number of extensions: 28778 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 5 Length of query: 283 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 199 Effective length of database: 1,222,130 Effective search space: 243203870 Effective search space used: 243203870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)