BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3338.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310788|ref|YP_003774880.1| hypothetical protein Hsero_1456...   129   2e-31

>gi|300310788|ref|YP_003774880.1| hypothetical protein Hsero_1456
           [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  129 bits (323), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 100/153 (65%), Gaps = 1/153 (0%)

Query: 1   MSTLSVSPDNPAAMPHLNKARYLIVAGWMLFMISLALPVQNNDRGYVALLVSFVFLTSIL 60
           ++ L V+P  P   PHL  AR +IVAGW LFM+SL LPV  ++ G +A + S +    + 
Sbjct: 5   LADLIVNPAKPDTAPHLKVARRVIVAGWGLFMLSLVLPVLGDEPGALAFIYSLMMPFFLF 64

Query: 61  DRLDPQLIWMSTYALVNTGLIASAFIAWKGRLISHPRCSVFFTLAALDTLFAPLF-SKEF 119
           D+     + MS Y++VN  LIAS FIA   +L++ P  SVFF L ALDT++ P    +EF
Sbjct: 65  DKPSWLGLAMSFYSVVNLSLIASLFIALGDKLLTRPATSVFFVLVALDTMWIPFTPDQEF 124

Query: 120 SQYPAFWCWVVSAILVAAGMNLARLRQQDHVSA 152
           +++PAFWCW  +A++VA GMN+ARL+++   +A
Sbjct: 125 ARHPAFWCWSAAAVMVAIGMNMARLKEKARQAA 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 484,959
Number of extensions: 17816
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)