BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3334.p
         (479 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312666|ref|YP_003776758.1| D-alanyl-D-alanine carboxipepti...   808   0.0  

>gi|300312666|ref|YP_003776758.1| D-alanyl-D-alanine
           carboxipeptidase 3 (S13) family signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/452 (85%), Positives = 419/452 (92%)

Query: 28  SAAQSLPPPVVGALRVAHIPQQNAGVLVVEADSGKRVLVSNNVSQPFNPASVMKLVTTDA 87
           +AAQSLPP VVGALRVAHIPQQN GVLV++ +  KRVLVSNN+ QPFNPASVMKLVTTDA
Sbjct: 33  AAAQSLPPAVVGALRVAHIPQQNTGVLVIDTEGSKRVLVSNNIGQPFNPASVMKLVTTDA 92

Query: 88  ALEILGPTYRWKTQAYIDGTLANGVLNGDLILKGGGDPKLVLENFWLFLRQLRARGIKDI 147
           ALE+LGPT+ WKTQAYIDGTL+ GVLNGDLILKGGGDPKLVLENFWL LRQLRARGI+DI
Sbjct: 93  ALEMLGPTFTWKTQAYIDGTLSGGVLNGDLILKGGGDPKLVLENFWLLLRQLRARGIQDI 152

Query: 148 RGNLVLDRSYFAESSYDPAQFDGDPQKPYNAGPDALLLNYRTQAFRFEPDVANGVVHVSM 207
           RGNLVLDRSYFA SSYDPAQFDGDPQKPYNAGPDALLLNYRTQAFRFEPD A+G V VSM
Sbjct: 153 RGNLVLDRSYFAPSSYDPAQFDGDPQKPYNAGPDALLLNYRTQAFRFEPDAASGTVSVSM 212

Query: 208 DPPMAGVTITPPRLSQEPCGDWQGKLMLDNQANAANFAGTYAADCGPRVWYVHPYRMTNL 267
           DPPMAG TITPPRLSQEPCGDWQGKLML+N A+ A F+G+Y+ADCG RVWYVHPYRM+N+
Sbjct: 213 DPPMAGFTITPPRLSQEPCGDWQGKLMLNNDASGATFSGSYSADCGARVWYVHPYRMSNV 272

Query: 268 QYVGASFVQMWAELGGSFSGRVLNGLVTPTARLMVEVQSPPLPEVIRDINKYSNNLMARQ 327
           QYVGASF QMWA+LGG F+GRVL+G VTP+AR+MVEVQSP LPEVIRDINKYSNN+MARQ
Sbjct: 273 QYVGASFAQMWADLGGRFAGRVLDGQVTPSARMMVEVQSPALPEVIRDINKYSNNVMARQ 332

Query: 328 VLLTLGAEMTGQPGDTTNAVRAVRSWLNDKGIDTSALVIENGAGLSRIDRVTPLLLGSLL 387
           VLLTLGAEMTGQPGD  NA RAVR WL DKGIDT+ L IENGAGLSRI+RVTP LL ++L
Sbjct: 333 VLLTLGAEMTGQPGDPVNAARAVRGWLGDKGIDTNGLAIENGAGLSRIERVTPGLLANVL 392

Query: 388 VQAYRSPLMPEFVSSLPLVGYDGTMRRRLKTQSVAGQAHIKTGTLNDVRSIAGYVQAASG 447
           +QA+RSPLMPEFVSSLPLVGYDGTMRRRLKTQ VAGQAHIKTGTLNDVRSIAGYVQAASG
Sbjct: 393 LQAWRSPLMPEFVSSLPLVGYDGTMRRRLKTQGVAGQAHIKTGTLNDVRSIAGYVQAASG 452

Query: 448 KSYVVVFLINHAAAPNGQQAQDALLQWVYENG 479
           K+YVVVFLINH AAPNGQ+AQDALLQWVYENG
Sbjct: 453 KTYVVVFLINHPAAPNGQKAQDALLQWVYENG 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,529,847
Number of extensions: 64654
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 390
Effective length of database: 1,198,455
Effective search space: 467397450
Effective search space used: 467397450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)