BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3330.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312662|ref|YP_003776754.1| orotidine 5'-phosphate decarbox...   546   e-156

>gi|300312662|ref|YP_003776754.1| orotidine 5'-phosphate
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  546 bits (1406), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/272 (97%), Positives = 269/272 (98%)

Query: 1   VTFIEKLNAAWTSRNSLLCVGLDPDLKKFPAELQGKPDAIFEFCRAIIDATADAACAFKP 60
           +TFIEKLNAAWTSRNSLLCVGLDPDLKKFPAELQGKPDAIFEFCRAIIDATA+AACAFKP
Sbjct: 1   MTFIEKLNAAWTSRNSLLCVGLDPDLKKFPAELQGKPDAIFEFCRAIIDATAEAACAFKP 60

Query: 61  QIAYFAALGAEEQLERICAYLRSQYPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVT 120
           QIAYFAALGAEEQLERICAYLRS YPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVT
Sbjct: 61  QIAYFAALGAEEQLERICAYLRSNYPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVT 120

Query: 121 VSPYMGWDSVSPYLEWKDRGVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTN 180
           VSPYMGWDSVSPYLEWKDRGVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTN
Sbjct: 121 VSPYMGWDSVSPYLEWKDRGVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTN 180

Query: 181 GQCGLVVGATFPQELAQVRAIIGDMPLLVPGVGAQGGDVQATVNAGKTASGTGMMINSSR 240
           GQCGLVVGATFPQELAQVRAIIGDMPLLVPGVGAQGGDVQATV AGKTA+GTGMMINSSR
Sbjct: 181 GQCGLVVGATFPQELAQVRAIIGDMPLLVPGVGAQGGDVQATVTAGKTAAGTGMMINSSR 240

Query: 241 AILYAKPEAGEDFAAAARRVAIETRDAINRFR 272
           AILYA P+AGEDFAAAARRVAIETRDAINRFR
Sbjct: 241 AILYATPQAGEDFAAAARRVAIETRDAINRFR 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,285
Number of extensions: 36774
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)