BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3329.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induc...   317   3e-88
gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induc...   127   3e-31

>gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 160

 Score =  317 bits (813), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 156/160 (97%), Positives = 159/160 (99%)

Query: 1   MDSTLDLATRVGHTLKSKGLLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKN 60
           MDSTLDLATRVG TLK+KGLLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKN
Sbjct: 1   MDSTLDLATRVGQTLKAKGLLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKN 60

Query: 61  ELLDISEALIAQHGAVSEEIAGAMAEGAVANSNSDVAVSTTGIAGPGGAVPGKPVGTVCF 120
           ELLDISEALIAQHGAVSEEIAGAMAEGAVANS+SDVAVSTTGIAGPGGAVPGKPVGTVCF
Sbjct: 61  ELLDISEALIAQHGAVSEEIAGAMAEGAVANSSSDVAVSTTGIAGPGGAVPGKPVGTVCF 120

Query: 121 GWRVGEKTYTERLVFKGDRQQVRAQTVEHSLKGLLKLLAD 160
           GWRVG+KTYTERLVFKGDRQQVRAQTVEHSLKGLLKLLAD
Sbjct: 121 GWRVGDKTYTERLVFKGDRQQVRAQTVEHSLKGLLKLLAD 160


>gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  127 bits (320), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 10  RVGHTLKSKGLLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKNELLDISEAL 69
           R+G  L  + + L TAESCT G +A A+ ++ G  +W +  FVTY+  +K  +L ++ A 
Sbjct: 7   RLGQLLCQQDMRLVTAESCTAGMVAAALGDVEGCGQWLEGAFVTYTEQAKEVMLRVARAD 66

Query: 70  IAQHGAVSEEIAGAMAEGAVANSNSDVAVSTTGIAGPGGAVPGKPVGTVCFGWRV----G 125
           + ++G  SEEIA  MA+GA+  S + VA++ TG+AGP  A  G P GTVCF W +    G
Sbjct: 67  MQRYGLTSEEIAERMAQGALEGSAARVAIANTGVAGPDDAPDGTPAGTVCFAWIIHHPQG 126

Query: 126 EKTYTERLVFKGDRQQVRAQTVEHSLKGLLKLL 158
           +   T R  F GDRQ VR Q  +HS+   L+LL
Sbjct: 127 KTLRTARRQFAGDRQAVREQAAQHSILQTLRLL 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 407,025
Number of extensions: 12768
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)