BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3310.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343...   480   e-137
gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478...   215   3e-57
gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563...   184   4e-48

>gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  480 bits (1235), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 228/240 (95%), Positives = 236/240 (98%)

Query: 1   MSEDKEPRRRFLRQVLAIVPAATTLGGATTVAVTQPAMADSSEPGKPRAYTPTYFTAPEW 60
           MS+DKEPRRRFLRQVLAIVPAA+TLGGATTVAV+Q AMADSSEPGKPRAYTPTYFTA EW
Sbjct: 1   MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60

Query: 61  AFLNAAVDHLIPSDQYGAGALETGVPEFIDHQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120
           AFLNAAVDHLIPSDQYGAGALETGVPEFID QMETPYGAGKLWYMQGPFHPDSVPELGYQ
Sbjct: 61  AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120

Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQVEVLKMMEAGKITFDTVPAKTFFS 180
           LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQ+EVLKMM+ GKI+F+TVPAKTFF+
Sbjct: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180

Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240
           FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG
Sbjct: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240


>gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478
           [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  215 bits (547), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 144/231 (62%), Gaps = 11/231 (4%)

Query: 8   RRRFLRQVLAIVPAATTLGGATTVAVTQPAMADSSE-PGKPRAYTPTYFTAPEWAFLNAA 66
           RRRFLR  L   P A        +AVT  ++   +E P   + Y P++F   E+A L+A 
Sbjct: 10  RRRFLRGALTAAPVAA-------LAVTAGSLTAKAEGPSPDQPYQPSFFNRDEFALLSAL 62

Query: 67  VDHLIPSDQYGAGALETGVPEFIDHQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPR 126
            D LIP+D  G GAL+ GVPEFID QM TPYG G+LWYMQGPF PD+ PE GYQL   PR
Sbjct: 63  ADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPR 122

Query: 127 DIYRQGIAACNDWCSKNHGKVFAELDKAKQVEVLKMMEAGK---ITFDTVPAKTFFSFML 183
           ++Y++G+A  +    + +G  + EL+  ++ +++   E G+   +   T+P    F+ +L
Sbjct: 123 ELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNLLL 182

Query: 184 GNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVS 234
            N  EGYF DP  GGN+ MG WKM+GFPGARAD+ DWVDQY   YP  P+S
Sbjct: 183 QNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233


>gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  184 bits (468), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 128/215 (59%), Gaps = 7/215 (3%)

Query: 30  TVAVTQPAMADSSEPGKPRAYTPTYFTAPEWAFLNAAVDHLIPSDQYGAGALETGVPEFI 89
           ++ + + A AD  E  + + Y P +F   +W F+ AA D LIP++  G GALET VP FI
Sbjct: 24  SIPLLKEAQADGLEGIELQHYKPVFFNPAQWLFILAACDRLIPAEGRGPGALETNVPVFI 83

Query: 90  DHQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPRDIYRQGIAACNDWCSKNHGKVFA 149
           D Q+    G G   Y QGP  PD+   LG+Q+   P+D+YR GI        + HGK F 
Sbjct: 84  DQQLHA--GLGSDIYQQGPHQPDAPATLGFQIPYAPQDVYRIGITLTQQISQQQHGKPFE 141

Query: 150 ELDKAKQVEVLKMMEAGKITFDTVPAKT-----FFSFMLGNTKEGYFADPMYGGNQKMGG 204
           +LD   +  +L  ++   + F  +  K+     FF  +LG+TK GY ADPMYGGN+ M  
Sbjct: 142 QLDAKDKDALLTALQKNGVDFAALGEKSMRPSQFFGQLLGDTKNGYLADPMYGGNKDMKA 201

Query: 205 WKMVGFPGARADFADWVDQYNVKYPYGPVSILGEK 239
           W  +GFPGARA + +WVDQ+NVKYP GPVS+ G++
Sbjct: 202 WVAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKR 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 830,360
Number of extensions: 36889
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)