BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3307.p (1069 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 1090 0.0 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 317 2e-87 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 293 6e-80 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 277 4e-75 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 253 7e-68 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/980 (57%), Positives = 703/980 (71%), Gaps = 51/980 (5%) Query: 5 SSLLSRLVRFSADSRLFRLQIAGHAE-DRFLLQAYVSSEQLHGVDASELIVLSLDAECPL 63 S LL++L++F+ SRL+ L + A L++A+ +SE LH V E+IVLSLDA L Sbjct: 2 SDLLTQLMQFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAVGLREVIVLSLDAGLRL 61 Query: 64 KSLIGCHATLETRLADGTRSRRTGLIHEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRV 123 KSLIG ATL T L+DG+R++ +GL++EAAKLG +GG RYRLR+VPW WLL QS SRV Sbjct: 62 KSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSRV 121 Query: 124 WQDKSLLDVVEDVLRDFPQHADWTWSADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGE 183 WQDK+++D+VEDV D+ HA WTW+ + + ++ RSYT+QYR+++L F+SRLLA E Sbjct: 122 WQDKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAAE 181 Query: 184 GMSWRVEEHAASPQGHRLVFFGDSSQRSALAEDVTSAAD---GGIRFHGARAQEQQDSIQ 240 G+SWRVEE A + GHRLV F DS+ A ED+TS + GIRFH A+E+QDSIQ Sbjct: 182 GLSWRVEESADAASGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSIQ 241 Query: 241 ALAACRSLQAASYTLLGYDDQNKQAIAASIPTHHAFGGRSAPRLESYDSAGLNAPDDSQA 300 ALAA R+LQ AS+TLL YD ++KQA+A S+PT H FGG+ APRLESYDS GL A D+ Sbjct: 242 ALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAAE 301 Query: 301 ADRHARLMMEAAEALNKRWRGRSTVRSLRAGSRFTLMGGPL---REQHQGQQEYAVLALL 357 AD +ARL +EA+EA NK W+ RSTVR+LR G+RFTL GPL Q ++YAVL+++ Sbjct: 302 ADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGAPRQYAVLSVM 361 Query: 358 GVGINQLPADTEASLAELFGPLPPLLEEAIAACLQTQPL-----HPD--WPLARTDT--L 408 VG+N LP D LAELFGP+PPLLE+ +AAC + Q L PD L +TD + Sbjct: 362 SVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAGV 421 Query: 409 IEQARSMGYANVFEAIRADIPWRPVLADGSGLQRRPHALARGSQSAIVVGYWGETQANGP 468 I QAR +GYAN FEAIRAD+ WRPVLADG+GL+ A ARGSQSAIVVG GET A+ Sbjct: 422 IAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASSA 481 Query: 469 DEICCDRLGRVRIRFHWQGRHDDAGATCWVRVGQRCAGPGMGLQFLPRIGQEVLVQFIEN 528 EI CDRLGRVRIRFHWQGR++DA ATCWVRV QR A G G+QFLPRIGQEVLVQFIE+ Sbjct: 482 GEIHCDRLGRVRIRFHWQGRNNDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIED 541 Query: 529 DLERPIILGALYNGRGEGSVIPTPGGEVKDCSS---MEVFAMASDTGISGQGNLAGTQAP 585 D++RP+I+GALYNGRGEG+ PTPGG+ S F A+D SGQGNLAG AP Sbjct: 542 DIDRPVIVGALYNGRGEGAAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNAP 601 Query: 586 TWHGASADRDGHRNPAAQWGIRSKEFGGWGYNQLLFDDSDGQGRLQFKTTQAGSELNLGH 645 TWHG S D DGH N AAQWGIRSKEFGG GYNQ++FDD+D QGR+Q KTTQ+GSELNLGH Sbjct: 602 TWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLGH 661 Query: 646 LIHSADNYRGSFRGTGLELRTDAYGVIRAGAGILFSSYRVEHRAHHRDPAADNTGLRAMA 705 LIH+ADNYRGSFRGTG ELRTDAYG +RAG GILFSSY++E A RDPA DN G A+ Sbjct: 662 LIHTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALL 721 Query: 706 RQAAHISKSFDEAARTHRTVGMSQGLDAMNAMKQAV------------------------ 741 +QAA + K+F+EA TH+TVG++ L A + Sbjct: 722 KQAALLGKTFNEATLTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPEN 781 Query: 742 ------ASQAEIAGQTLPGSSTPLIQIAAKEGLGVVAGQHLQLANGSSVSLMAGQDAQHI 795 A+ + LP S+ LI IAAKEGLG VAGQH+QLANG +V+L++G D+Q + Sbjct: 782 SGADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQV 841 Query: 796 SGHQFRLRTQQAIGLLAGASAAGDQGIGLQMIAAQGDVAVQAQADGMSVQARDQLTLVSA 855 +G+Q+RLR+ QA+G+LAGA AAG+ G GLQMIAAQ ++ VQAQADG++VQARDQ+ ++SA Sbjct: 842 AGNQYRLRSGQALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVISA 901 Query: 856 NAAVNWAAAKKISLSTAGGANITIEGGNITVQCPGELTVHAGQVWLDGPVRHLVQLPALP 915 NA V+WAAAKKI+LSTAGGANITIEGGNITVQCPG+LT+HA Q GPV + LP +P Sbjct: 902 NAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQMP 961 Query: 916 RTAVDIKKLVFNLHMQDIPG 935 + K + N Q PG Sbjct: 962 NSVC--KDCILNAMKQGAPG 979 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 317 bits (813), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 291/1008 (28%), Positives = 446/1008 (44%), Gaps = 161/1008 (15%) Query: 14 FSADSRLFRLQIAGHA--EDRFLLQAYVSSEQLHGVDASELIVLSLDAECPLKSLIGCHA 71 S ++RL + A A + ++ + E ++ ++ LS+ + LK IG Sbjct: 21 LSQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEI 80 Query: 72 TLETRLADGTRSRRTGLIHEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRVWQDKSLLD 131 +L ADG G +A+ LG DGG RYRLR+ + L + S ++QD ++ D Sbjct: 81 SLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRHDSFLFQDMTVTD 140 Query: 132 VVEDVLRDFPQHADWTWSADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGEGMSWRVE- 190 + VL+++PQ A+++ L+V L R QYR+T F+ R+LA EG+++R E Sbjct: 141 IAAAVLKEYPQ-ANFS-----LEVTQTLAKRDICTQYRETDYAFLRRILASEGLNFRFEH 194 Query: 191 -------EHAAS-PQG-HRLVFFGDSSQRSALAEDVTSAADGGIRFHGARAQEQQDSIQA 241 +H S P H+LV F +++ AL D IRFH A E D+I Sbjct: 195 EQDDATQQHDQSQPHARHKLVIFDRNAKAPAL-----PGGDEYIRFHRVAAMEASDAITD 249 Query: 242 LAACRSLQAASYTLLGYDDQNKQAIAASIPTHHAFGGRSA---PRLESYDSAGLNAPDDS 298 AA RS++ L + + S P+H A P L YD G D Sbjct: 250 FAAVRSVRPNGVALASWHPEK-----LSSPSHEEGSTLDAGELPSLPVYDGTGQQDFADQ 304 Query: 299 QAADRHARLMMEAAEALNKRWRGRSTVRSLRAGSRFTLMGGPLREQHQ----GQQEYAVL 354 AA HA+LM++A E NKR+ G R L AG+RFTL+ QH+ G+ + V+ Sbjct: 305 DAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLL------QHERYPEGENAFKVV 358 Query: 355 ALLGVGINQLPADTEASLAELFGPLPPLLEEAIAACLQTQPLHPDWPLARTDTLIEQARS 414 ++ N + A++ + P L AA R D L ++ Sbjct: 359 SVRHAARNNV----SANITRILAPAAGALFGGSAAA------------ERDDDL----QA 398 Query: 415 MGYANVFEAIRADIPWRPVLADGSGLQRRPHALARGSQSAIVVGYWGETQANGPDEICCD 474 Y N F AIR +P P + + R ARG+Q+A+V G + D Sbjct: 399 GTYRNSFTAIRDSVPMVP-----AAIAERLKPTARGTQTALVTGA-------ADAAVTTD 446 Query: 475 RLGRVRIRFHWQ-------------GRHDDAGATC--------WVRVGQRCAGPGMGLQF 513 R RV+++FHWQ G DD W+RV + +GP G QF Sbjct: 447 RNHRVKVQFHWQRGKSPNPGGLRETGNLDDKDGNANGNDSSGTWIRVAEAQSGPNWGSQF 506 Query: 514 LPRIGQEVLVQFIENDLERPIILGALYNGRGEGSVIPTPGGEVKDCSSMEVFAMASDTGI 573 +PR+G EVLV FIE D++RP+++ LYNG P P G +D+GI Sbjct: 507 IPRVGSEVLVDFIEGDIDRPVVVAQLYNG---SDAPPFPAG--------------ADSGI 549 Query: 574 SGQGNLAGTQAPTWHGASADRDGHRNPAAQWGIRSKEFGGWGYNQLLFDDSDGQGRLQFK 633 + G+++G WH + D G G+NQ + DD+ Q R++ Sbjct: 550 NHAGSISG-----WHSTAHD-------------------GSGFNQWVVDDTQSQLRMRLA 585 Query: 634 TTQAGSELNLGHLIHSADN--YRGSFRGTGLELRTDAYGVIRAGAGILFSSY-RVEHRAH 690 ++ A S+LNLGHL+ AD RGS+RG G ELR+DA+GV+R G G+L S+ R + A Sbjct: 586 SSTAKSQLNLGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGAS 645 Query: 691 HRDPAADNTGLRAMARQAAHISKSFDEAARTHRTVGMSQGLDAMNAMKQAVASQ------ 744 D G A + A ++++ ++A + + +Q L A + Sbjct: 646 VTGTQMDAAGAIAQLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHP 705 Query: 745 AEIAGQTLPGSSTPLIQIAAKEGLGVVAGQHLQLANGSSVSLMAGQDAQHISGHQFRLRT 804 A + GQ S A + + A + + + SS++ + + + T Sbjct: 706 ASVNGQDALKSDGSTRNTDAAQPVEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTT 765 Query: 805 QQAIGLLAGASAAGDQGI---------GLQMIAAQGDVAVQAQADGMSVQARDQLTLVSA 855 Q + A +A+ G G+Q AA G V++QA D + + A +T+ S Sbjct: 766 QGDVHWSAADTASAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSV 825 Query: 856 NAAVNWAAAKKISLSTAGGANITIEGGNITVQCPGELTVHAGQVWLDGPVRHLVQLPALP 915 N ++ A +KI L AG A++T+EGGNIT CPG +V G L ALP Sbjct: 826 NDSIEIKARQKIVLQ-AGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALP 884 Query: 916 RTAVDIKKLVFNLHMQDIPGPHGLALAETPWRIVAAESAEQALMVTEK 963 T + F + P+G L++ P+RI + SA L T K Sbjct: 885 DTKYKLFDEAFV-----VKDPNGTPLSDIPYRIKS--SAGDQLATTAK 925 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 293 bits (749), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 274/977 (28%), Positives = 428/977 (43%), Gaps = 137/977 (14%) Query: 31 DRFLLQAYVSSEQL-HGVDASELIVLSLDAECPLKSLIGCHATLETRLADGTRSRRTGLI 89 D L Q V SE+L G D + +V + D + LK LI TL + + G + Sbjct: 44 DVLLPQRMVGSERLGRGYDYTIDLVSTRD-DIELKKLIAQPVTLWLQQDGSDYAPLHGYV 102 Query: 90 HEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRVWQDKSLLDVVEDVLRDFPQHADWTWS 149 H A +LG DG +++ M PW L + +R+WQD D++ DV F QHA + Sbjct: 103 HTARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILADV---FDQHA-YARG 158 Query: 150 ADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGEGMSWRVEEHAASPQGHRLVFFGDSSQ 209 +++T RSY QY +T F+ RL+ EG + E GH LV ++ Q Sbjct: 159 NYRFEIVTPALPRSYCTQY-ETDWHFVQRLMEEEGW-YAYHEQKPDGSGHVLVITDNTDQ 216 Query: 210 RSALAEDVTSAADGGIRFHGARAQEQQDSIQALAACRSLQAASYTLLGYDD-----QNKQ 264 LA + + FHGA Q++ + I +A R L A++ DD KQ Sbjct: 217 AKPLAPEQ-------LAFHGAGTQDEVNRILHWSASRGL-ASTRLATRTDDYKSPGDQKQ 268 Query: 265 AIAASIPTHHAFGGRSAPRLESYDSAGLNAPDDSQAADRHARLMMEAAEALNKRWRGRST 324 +P H A G LE Y+ +G + DR ARL +E E+ KR+ G S Sbjct: 269 TQERVLPEHGALPGE----LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSG 324 Query: 325 VRSLRAGSRFTLMGGPL-REQHQGQQEYAVLALLGVGINQLPADTEASLAELFGPLPPLL 383 R+L AG FTL P R + ++ ++A+ N LP A + G L P L Sbjct: 325 ARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTAR--DFPGSLKPQL 382 Query: 384 EEAIAACLQTQPLHPDWPLARTDTLIEQARSMGYANVFEAIRADIPWRPVLADGSGLQRR 443 + A+ ++ D AR+ N FE R +P+R D + Sbjct: 383 DAFKASMGRS-----------NDDAGGNARTGHCFNRFEVQRRKLPYRSPF-DHTKPVMH 430 Query: 444 PHALARGSQSAIVVGYWGETQANGPDEICCDRLGRVRIRFHWQGRHD-DAGATCWVRVGQ 502 P Q+A+VVG GE E+ D+L RV+++F W + D A+CWVRV Sbjct: 431 P-------QTAVVVGPQGE-------EVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSY 476 Query: 503 RCAGPGMGLQFLPRIGQEVLVQFIENDLERPIILGALYNGRGEGSVIPTPGGEVKDCSSM 562 AG G +PR+GQE+++ F+ D +RP+ G L+N Sbjct: 477 PNAGENWGEVKVPRVGQELIISFLNGDPDRPVATGRLFNQE------------------- 517 Query: 563 EVFAMASDTGISGQGNLAGTQAPTWHGASADRDGHRNPAAQWGIRSKEFGGWGYNQLLFD 622 Q P WH DG + G++SKEFGG G+NQL+ D Sbjct: 518 --------------------QPPQWH-----TDGRLS-----GLKSKEFGGNGFNQLVMD 547 Query: 623 DSDGQGRLQFKTTQAGSELNLGHLIHSADNYRGSFRGTGLELRTDAYGVIRAGAGILFSS 682 D+ Q R+ ++Q+ ++LNLG+L+ ADN R +F G+G L TD YG + G+ SS Sbjct: 548 DTTSQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSS 607 Query: 683 YRVEHRAHHRDPAADNTGLRAMARQAAHISKSFDEAARTHRTVGMSQG--LDAMNAMKQA 740 Y R + D + ++ + +A +++ ++A ++Q D ++A + Sbjct: 608 Y---GRPGPQGTQLDASEATSLMKASADLARGLSDSASRAGAEALAQDSLKDFVDATEDK 664 Query: 741 VASQAEIAGQTLPGSSTPLIQIAAKEGLGVVAGQHLQLANGSSVSLMAGQDAQHISGHQF 800 + Q + + PL+ +AA G+G+ Q Q+ + +L +G+D SG Sbjct: 665 YSGQGQGSANRF---KKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSL 721 Query: 801 RLRTQQAIGLLAGASAAGDQGIGLQMIAAQGDVAVQAQADGMSVQARDQLTLVSANAAVN 860 ++ I L A Q G+++ AA+G V +QAQ+D + + A L+S + V Sbjct: 722 LATVKEKISLFA-------QNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVE 774 Query: 861 WAAAKKISLSTAGGANITIEGGNITVQCPGELTVHAGQVWLDGPVRHLVQLPALPRTAVD 920 A ++ +S AGG+ I I IT PG+ A + GP +P + ++ + Sbjct: 775 IHAKDEVMIS-AGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSELQ 833 Query: 921 IKKLVFNLHMQDIPGPHGLALAETPWRIVAAESAEQALMVTEKLLHGRSDSQGKLTLSDT 980 + F H+ D W A +A +A++ + G D+QG LS Sbjct: 834 PSDMEFR-HLTD-------------WGEPLAGAAYKAILSDGSVRKGTLDAQGIARLSGV 879 Query: 981 E--QQALLEAYNAQPGQ 995 A +E YN QP Q Sbjct: 880 PAGTSAKVE-YNYQPLQ 895 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 277 bits (708), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 283/946 (29%), Positives = 409/946 (43%), Gaps = 140/946 (14%) Query: 19 RLFRLQIAGHAEDRFLLQAYVSSEQLHGVDASELIVLSLDAECPLKSLIGCHATLETRLA 78 RL ++ G ED + ++ +L +L LSL+A+ L+ L+G LE Sbjct: 39 RLQAVEQVGPGEDSSAIDQAIAGYRL------QLSCLSLNADISLRKLLGQPVLLELDTD 92 Query: 79 DGTRSRRTGLIHEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRVWQDKSLLDVVEDVLR 138 G R+ G + G +GG RY L + PW L R S V+QD S ++E V Sbjct: 93 GGARAFH-GHVTACRMEGANGGMARYLLTIEPWLSFLRHRRDSAVFQDMSAPAIIEAVFA 151 Query: 139 DFPQHADW--TWSADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGEGMSWRVEEHAASP 196 D+ W D D + RS QY++T L F++RL+ EG+ + +E Sbjct: 152 DYRGQGRLQPAWRLDLQDA-SAYAKRSLATQYQETDLAFVTRLMVEEGLFYYIEHQ---- 206 Query: 197 QGHRLVFFGDSSQRSALAEDVTSAADGG---------IRFHGARAQEQQDSIQALAACRS 247 GDS+ S + V A G + F A QD+I + R Sbjct: 207 --------GDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQTNAVMAQDNIDRWRSVRR 258 Query: 248 LQAASYTLLGYDDQNKQAIAASIPTHHAFGGRSAPR---LESYDSAGLNAPDDSQAADRH 304 Q + +L +D + AAS A G +A L S D+ G + + A R Sbjct: 259 WQTNAVEILTWDYRQTAVRAAST----ASSGENAHDKLVLTSRDAPGQYINESPEQAQRQ 314 Query: 305 ARLMMEAAEALNKRWRGRSTVRSLRAGSRFTLMGGPLREQHQGQQEYAVLALLGVGINQL 364 A M+A E NK + G TVRS G+ FTL G + Q + +L ++ N L Sbjct: 315 ALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDDQ-FVLLRVVHQAHNNL 373 Query: 365 PADTEASLAELFGPLPPLLEEAIAACLQTQPLHPDWPLARTDTLIEQARSMGYANVFEAI 424 AD +A + L G + + L D L DT QAR + Y N FEAI Sbjct: 374 SADLKAGVTALLGQAQLDDHDHKGSLL-------DTALRSADT---QARPV-YRNRFEAI 422 Query: 425 RADIPWRPVLADGSGLQRRPHALARGSQSAIVVGYWGETQANGPDEICCDRLGRVRIRFH 484 R IP+RP+L D G + P A G QSA+VVG G+ + DR R+R++FH Sbjct: 423 RNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQA-------VHTDRDNRIRVQFH 475 Query: 485 WQ-GRHDDAG-----------------ATCWVRVGQ---RCAGPGMGLQFLPRIGQEVLV 523 WQ G +G A WVRV AG G Q +PR+GQEVL+ Sbjct: 476 WQRGERSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLI 535 Query: 524 QFIENDLERPIILGALYNGRGEGSVIPTPGGEVKDCSSMEVFAMASDTGISGQGNLAGTQ 583 FIE D++RP+++G LYNGRG + G+ G G+ G Sbjct: 536 DFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQ-------------------GAGSATGN- 575 Query: 584 APTWHGASADRDGHRNPAAQWGIRSKEF-----GGWGYNQLLFDDSDGQGRLQFK----T 634 AP W S+ H + A GI+++ GG GYNQL+FDDS GQ R + Sbjct: 576 APAWFPGSS--GAHNHAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADA 633 Query: 635 TQAGSELNLGHLIHSADNYRGSFRGTGLELRTDAYGVIRAGAGILFSSYRVEHRAHHRDP 694 SELNLG L DN R + G G EL+T +RAG G+L S+ + Sbjct: 634 HDGASELNLGLLRQQTDNQRLATTGQGFELKTLYSAALRAGQGLLVSTEK------SISA 687 Query: 695 AADNTGLRAMARQAAHISKSFDEAARTH--RTVGMSQG--LDAMNAMKQAV----ASQ-- 744 D T + ++A + E A+ H R G S L A+ AM +++ A+Q Sbjct: 688 QLDMTQGLSQLSESAQKQQQLAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSA 747 Query: 745 ----------AEIAGQTLPGSSTPLIQIAAKEGLGVVAGQHLQLANGSSVSLMAGQDAQH 794 A S P +Q+++ G+ V +A G + S+ AG+D Sbjct: 748 STGSSGSDGQGSSATTATTAFSAPQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQ 807 Query: 795 ISGHQFRLRTQQAIGLLAGASAAG----DQGIGLQMIAAQGDVAVQAQADGMSVQARDQL 850 I+ ++ I L A+ +Q G+ + AA G V+VQ+QA + + QL Sbjct: 808 IAQGNLHYLSKSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQL 867 Query: 851 TLVSANAAVNWAAAKKISLSTAGGANITIEGGNITVQCPGELTVHA 896 T+ S V+ A + + L+ A GA + +EGGNI V PG + A Sbjct: 868 TVASVGKDVSVAGKQHVQLA-AQGAWLRLEGGNIEVHGPGAMEFRA 912 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 253 bits (646), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 251/907 (27%), Positives = 389/907 (42%), Gaps = 127/907 (14%) Query: 13 RFSADSRLFRLQIAGHAEDRFLLQAYVSSEQLHGVDASELIVLSLDAECPLKSLIGCHAT 72 R + RL +L + D L Q V++E+L+ + +L+ L+ LI T Sbjct: 15 RITQHRRLLQLD-SSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPVT 73 Query: 73 LETRLADGTRSRRTGLIHEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRVWQDKSLLDV 132 L R DG G +H A +LG DG +L + PW L + +R+WQDK D+ Sbjct: 74 LWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTEDI 133 Query: 133 VEDVLRDFPQHADWTWSADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGEGMSWRV-EE 191 + DV + PQ + R Y QY +T F+ RL+ EG W E Sbjct: 134 LADVFNNHPQ----ARGHYRFQLERPYTPRPYCTQY-ETDWHFVQRLMEEEG--WFAHHE 186 Query: 192 HAASPQGHRLVFFGDSSQRSALAEDVTSAADGGIRFHGARAQEQQDSIQALAACRSLQAA 251 GH LV ++ L + GI FHGA +++ D I +A R+L + Sbjct: 187 QREDGSGHVLVITDNTWNLPGLPQQ-------GIAFHGAAPRDELDKILHWSASRTLSSK 239 Query: 252 SYTLLGYDDQN----KQAIAASIPTHHAFGGRSAPRLESYDSAGLNAPDDSQAADRHARL 307 + D ++ K+A +P + G+ +LE Y+ G + + +R A L Sbjct: 240 GWRGRSDDYKSPGMKKEAEEQVMPEY----GQLPAQLEMYEYTGAYSFRLQEQGNRQADL 295 Query: 308 MMEAAEALNKRWRGRSTVRSLRAGSRFTLMGGPL-REQHQGQQEYAVLALLGVGINQLPA 366 +E E+ +R+ S VR+L G F L P R + ++++ +LA+ N LP Sbjct: 296 QVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPL 355 Query: 367 DTEASLAELFGPLPPLLEEAIAACLQTQPLHPDWPLARTDTLIEQARSMGYA-NVFEAIR 425 +A P L+ A+ A ++ + + +A TD G+ N FE R Sbjct: 356 SHQAL------DFPGSLKGALMAFKES--IRRERQVAETDN-----EHTGHCFNRFEVQR 402 Query: 426 ADIPWRPVLADGSGLQRRPHALARGSQSAIVVGYWGETQANGPDEICCDRLGRVRIRFHW 485 +P+RP A RP L Q+AIVVG E E+ D L R++++F W Sbjct: 403 RKLPFRPARAHA-----RPVMLP---QTAIVVGPASE-------EVYTDHLDRIKVQFRW 447 Query: 486 QGRHD-DAGATCWVRVGQRCAGPGMGLQFLPRIGQEVLVQFIENDLERPIILGALYNGRG 544 + + A+CWVRV AG G +PRIGQEV+V F+ D +RP++ G L+N Sbjct: 448 DRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDRPVVTGRLFNAE- 506 Query: 545 EGSVIPTPGGEVKDCSSMEVFAMASDTGISGQGNLAGTQAPTWHGASADRDGHRNPAAQW 604 Q P WH +G + Sbjct: 507 --------------------------------------QRPQWH-----TNGRLS----- 518 Query: 605 GIRSKEFGGWGYNQLLFDDSDGQGRLQFKTTQAGSELNLGHLIHSADNYRGSFRGTGLEL 664 G++SKEFGG G+NQ++ DD+ Q R+ +T ++LNLGHL+ N R SF G+G L Sbjct: 519 GVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLNLGHLVSQTGNERRSFFGSGFAL 578 Query: 665 RTDAYGVIRAGAGILFSSYRVEHRAHHRDPAADNTGLRAMA-----RQAAHISKSFDEAA 719 TDAYG I G+ S+Y P A T L A + A++S++ E A Sbjct: 579 STDAYGAIVTHKGLYISTY--------GRPGAQGTQLDAREATGQLKSGANLSRTLSETA 630 Query: 720 RTHRTVGMSQGLDAMNAMKQAVASQAEIAGQTLPGSSTPLIQIAAK-EGLGVVAGQHLQL 778 ++ G +A+ A + E Q I +AA +G+G+ + + Sbjct: 631 AKAGAEPLA-GQEALRDFIDATQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHT 689 Query: 779 ANGSSVSLMAGQDAQHISGHQFRLRTQQAIGLLAGASAAGDQGIGLQMIAAQGDVAVQAQ 838 G ++L +G D G + I L A + G+++ +A+G V VQAQ Sbjct: 690 HAGGEITLSSGADTSIAVGKSLLASVAEKISLFAFKA-------GIKLFSAKGKVEVQAQ 742 Query: 839 ADGMSVQARDQLTLVSANAAVNWAAAKKISLSTAGGANITIEGGNITVQCPGELTVHAGQ 898 +D + + A L+SA+ V A +++ L TAGG+ I + IT G AG Sbjct: 743 SDDLELIAEKVARLLSASGRVEIRAKEEV-LITAGGSFIRLNASGITQGTSGAWEAKAGT 801 Query: 899 VWLDGPV 905 + GP Sbjct: 802 HAMPGPT 808 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,375,755 Number of extensions: 149076 Number of successful extensions: 551 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 492 Number of HSP's successfully gapped: 15 Length of query: 1069 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 974 Effective length of database: 1,170,045 Effective search space: 1139623830 Effective search space used: 1139623830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)