BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3304.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...    82   8e-18
gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766...    74   3e-15

>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score = 82.4 bits (202), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 57/87 (65%)

Query: 9   PGRWHRLPHRRLLEFVSQHRDLALSAGLKDQERQLYYVLLAVFTSGKAVQHPVVVELMKD 68
           P    +L  R LL+FV++++  A++AGL D +RQ  YVLLA++TSG+   HP++  LM D
Sbjct: 217 PDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLALYTSGRGTAHPLMQALMAD 276

Query: 69  PPTETAQFIEAIMRLPGEVFVSGQPLW 95
           PP     + EAI  +P EV+ +G PLW
Sbjct: 277 PPASLDAYYEAIQAMPEEVWEAGAPLW 303


>gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score = 73.6 bits (179), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 54/78 (69%)

Query: 18  RRLLEFVSQHRDLALSAGLKDQERQLYYVLLAVFTSGKAVQHPVVVELMKDPPTETAQFI 77
           ++L  FV+Q++  A +AGL+D +RQ  YVL+A++TSGK V+ P   ++M+ PP    +F 
Sbjct: 78  QQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFS 137

Query: 78  EAIMRLPGEVFVSGQPLW 95
           +A++ LP  V+ SG PLW
Sbjct: 138 DAMIGLPQSVYDSGTPLW 155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 386,883
Number of extensions: 14023
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)