BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3300.p (361 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 707 0.0 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 360 e-100 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 356 1e-99 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 334 5e-93 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 332 4e-92 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/361 (95%), Positives = 353/361 (97%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAADI 120 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDK+FV+ERVKKAADI Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAMN 240 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYD+PANLFVAGFIGSPAMN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 FIPATLRRGAGAAEVEFADGTRVPAPYGSALQGNDGQQVTYGVRPEHLSIGAAGTGIATQ 300 FIPATLRR A AEVEFADGTRVPAPYG+ALQGNDGQ+VTYGVRPEHLSIGAAG GIAT+ Sbjct: 241 FIPATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAGQGIATK 300 Query: 301 VIVVEPTGADTEVFSRFGQTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDTASGQSLAA 360 VIVVEPTGADTEVFSRFG TSLTSIFRERHDFGAGDVIHLVPDHSRTHLFD SG+SLA Sbjct: 301 VIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAESGKSLAG 360 Query: 361 R 361 R Sbjct: 361 R 361 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/373 (52%), Positives = 248/373 (66%), Gaps = 33/373 (8%) Query: 1 MASVQIRAVKKQFGS----TQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 MA++ ++ V+K +G+ +I G+D +IADGEF V+VGPSGCGKSTLLRM+AGLEEI+ Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKK 116 G+I+IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + KS ++ RV++ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 AA IL L LL+R PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGS 236 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G+ EQ G P ++Y PA FVA FIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PAMNFIPATLRRGAGAAEVEFADGT---RVPAPYGSALQGNDGQQVTYGVRPEHL--SIG 291 P MN + L + EV + + R+P P L G GQ+ GVRPEHL + Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQP----LTGAAGQERILGVRPEHLLPILD 296 Query: 292 AAGTGIATQVIVVEPTGADTEVFSRFGQTSLT----------SIFRERHDFGAGDVIHLV 341 + ++ +V +VE GA+ V +R G +L + R FGAGDV Sbjct: 297 GSAAQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDV---- 352 Query: 342 PDHSRTHLFDTAS 354 H FD S Sbjct: 353 ------HWFDVKS 359 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 356 bits (914), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 192/367 (52%), Positives = 249/367 (67%), Gaps = 17/367 (4%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MA+V IR + K++ +++R ++++I DGEF V VGPSGCGKSTLLRM+AGLEEI+ G++ Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAADI 120 IG +N V R +AMVFQ+YALYPHM++ DNMAF L +A K K+ ++ V+ AA I Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 L ++ LLDR PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLDA LRV+MR E +LH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAMN 240 LKTT IYVTHDQIEAMT+AD+IVV+ +G +EQ G P LY HPAN FVAGFIGSP MN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 FIPATLRRGAGAAEVEFADGTRVPAPYG----SALQGND---GQQVTYGVRPEHLSIGAA 293 FI T+ A ++ ADG +V P G +A+ G+ GQ+VT GVRPEHL+I Sbjct: 241 FIDGTV------AAIQ-ADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQG 293 Query: 294 GTGIATQVIVVEPTGADTEVFSRFGQTSLTSIFR--ERHDFGAGDVIHLVPDHSRTHLFD 351 + + +E G + +++ + + I R + D G V+ L D +R HLF Sbjct: 294 QAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLF- 352 Query: 352 TASGQSL 358 A GQ+L Sbjct: 353 GADGQAL 359 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 334 bits (857), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 189/368 (51%), Positives = 239/368 (64%), Gaps = 12/368 (3%) Query: 1 MASVQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 MA V I+ ++K + G ++ G+++DI DGEF VLVGPSGCGKSTLLRML GLEEI+GGE Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAAD 119 + IGG VVN++ P +R IAMVFQ+YALYPHM V NMAF L +A KS ++ R++ AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 IL ++ LL R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLDA LRVQ R EI +L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 HQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAM 239 H++L T +YVTHDQ+EAMT+ D+IVVM +G ++Q G PL+LY P NLFVAGFIGSP M Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 240 NFIPATLRRGAGAA-EVEFADGTRVPA---PYGSALQGNDGQQVTYGVRPEHLSIGAA-G 294 NF + R + +VE A G R+ A P G G VT G+R E + G G Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGV----TPGAAVTLGLRAEQIREGLGDG 296 Query: 295 TGIATQVIVVEPTGADTEVFSRF-GQTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDTA 353 + V +VE G ++ G + + G I L HLFD A Sbjct: 297 QPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFD-A 355 Query: 354 SGQSLAAR 361 GQ+L R Sbjct: 356 QGQALRRR 363 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 332 bits (850), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 181/329 (55%), Positives = 234/329 (71%), Gaps = 22/329 (6%) Query: 1 MASVQIRAVKKQFG-STQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 MAS+ +RA +K +G + +IR VD+DI + EF V +GPSGCGKSTLLR +AGLE++T G+ Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAAD 119 + IGG VN+V R +AMVFQ+YAL+PHMTV +NM+F LTLAK K+ +E++V++AA Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 IL L +LL R P++LSGGQRQRVA+GRAIVR P VFLFDEPLSNLDA LR Q R EI L Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 180 HQRLKTTS-IYVTHDQIEAMTMADQIVVM-------RDGLVEQRGRPLDLYDHPANLFVA 231 H++ + S +YVTHDQ+EAMT+AD+IV++ R G + Q G P++LY HP N FVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 232 GFIGSPAMNFIPATLRRGAGAAE------VEFADGTRVPAPYGSALQGNDGQQVTYGVRP 285 GFIGSP MNF+PA + AG E + ++ T + A G ALQ GQ VT GVRP Sbjct: 241 GFIGSPRMNFLPAQV---AGVQENGILVRLSGSEETLLVAAQG-ALQ--PGQMVTVGVRP 294 Query: 286 EHLSIGAAGT-GIATQVIVVEPTGADTEV 313 EH+ IG+ G GI +V++VE G T V Sbjct: 295 EHMEIGSQGQYGIHREVVLVERLGEQTYV 323 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,079,594 Number of extensions: 46212 Number of successful extensions: 573 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 364 Number of HSP's successfully gapped: 141 Length of query: 361 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 275 Effective length of database: 1,212,660 Effective search space: 333481500 Effective search space used: 333481500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)