BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3298.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312627|ref|YP_003776719.1| malate/L-lactate dehydrogenase ...   664   0.0  

>gi|300312627|ref|YP_003776719.1| malate/L-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/356 (91%), Positives = 341/356 (95%)

Query: 1   MVLCMAAPERFSAQALRQFATSLLQQAGLDADKADSVAATLVDGDLLGHDTHGLALLAPY 60
           MV+ MAAPERFSA ALRQFAT+LLQ+AGL+ADKADSVAATLVDGDLLGHDTHGLALLAPY
Sbjct: 1   MVVAMAAPERFSADALRQFATTLLQKAGLEADKADSVAATLVDGDLLGHDTHGLALLAPY 60

Query: 61  VKELEKGTMTRTGEPEVLSERAAALAWDGRRLPGPWLVHRGIDALIPKARDYGTASLTIH 120
           VKELEKG M ++G+PEVLSERAAALAWDGRRLPGPWLVH+GIDALIPKARDYGTASLTIH
Sbjct: 61  VKELEKGAMAKSGQPEVLSERAAALAWDGRRLPGPWLVHQGIDALIPKARDYGTASLTIH 120

Query: 121 HSHHIACLAAYLLRATQEGFMMILASSDPAVQSVAPFGGTQAVFTPNPIAAGIPTSGTPF 180
           HSHHIACLAAYLLRATQEGFMMILASSDPAVQSVAPFGGTQAVFTPNPIAAGIPTSGTPF
Sbjct: 121 HSHHIACLAAYLLRATQEGFMMILASSDPAVQSVAPFGGTQAVFTPNPIAAGIPTSGTPF 180

Query: 181 LVDISASITTNGMSNRLHKAGQQFEEEWLIDGQGHPSRDPAVLTATPPGTILPLGGLSAG 240
           LVDISASITTNGMSNRLHKAG+QFEEEWLIDG GHPSRDPAVL+ATPPGTILPLGGLSAG
Sbjct: 181 LVDISASITTNGMSNRLHKAGKQFEEEWLIDGAGHPSRDPAVLSATPPGTILPLGGLSAG 240

Query: 241 HKGFGLALLIEALTGGLSGFGRADPPAGWGATVFLSLYDPSAFGGEQDFKRQMDHIAQAC 300
           HKGFGLA+LIEALTGGLSGFGRADP AGWGATVF+SLYDPSAFGGEQDFKRQMDHIAQAC
Sbjct: 241 HKGFGLAVLIEALTGGLSGFGRADPAAGWGATVFMSLYDPSAFGGEQDFKRQMDHIAQAC 300

Query: 301 RHNAPRPGVGQVRMPGDRALQRRAEQLEQGVALHPTIAPMLREAAASHGLAFPAAL 356
           R N PRPGVGQVRMPGDR +QRRAEQL QGV LHPTIAPMLREA A++ L FPA L
Sbjct: 301 RANPPRPGVGQVRMPGDRGMQRRAEQLAQGVTLHPTIAPMLREAGAAYDLEFPATL 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,339,358
Number of extensions: 64576
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)