BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3297.p (262 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 462 e-131 gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 166 2e-42 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 94 8e-21 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 83 3e-17 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 82 3e-17 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 462 bits (1189), Expect = e-131, Method: Compositional matrix adjust. Identities = 235/262 (89%), Positives = 246/262 (93%), Gaps = 6/262 (2%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 MPIEAIEPQRLYRQISDQLRKLIV+GEFAVGSRLPSERDLALQLGVSRPSLREALIALEV Sbjct: 1 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 Query: 61 EGHIEVRMGSGIYVCPPVQRERRSDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIA 120 EGHIEVRMGSGIYVCPPVQRERR DLS EEGPLELIRAREMIEGEVAYAAAQHGSKQQIA Sbjct: 61 EGHIEVRMGSGIYVCPPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIA 120 Query: 121 AVEEAYALMMAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLHS 180 AVEEAYALM+++A+AGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLF+RLHS Sbjct: 121 AVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHS 180 Query: 181 HFDGTRVWQEAIEEHGLIMQALRERNAEQARAAMRRHMDIAFTRYSANLIRAYGHRQQGP 240 HFDGTRVWQEAI+EH L+M+ALR+RN EQARAAMRRHMDIAFTRYSANLIR YG R Sbjct: 181 HFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIREYGDRV--- 237 Query: 241 EQEQERGKPRKRATRKSALQLK 262 Q+QER PRKRA RKS QLK Sbjct: 238 -QQQER--PRKRAVRKSDTQLK 256 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 136/229 (59%), Gaps = 4/229 (1%) Query: 7 EPQRLYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEV 66 + +RLY QI+D+LR ++ F RLP ER LA QLGVSRPS+REAL+ALE+EG +E+ Sbjct: 18 DSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEI 77 Query: 67 RMGSGIYVC---PPVQRERRS-DLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAV 122 RMGSG+Y+ PP Q+E + D +++ AR + EG + A + I A+ Sbjct: 78 RMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKAL 137 Query: 123 EEAYALMMAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLHSHF 182 Y M +AG P DR FHIR+A TGN VLV V +L+D R P+ +L H+ Sbjct: 138 RAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDHY 197 Query: 183 DGTRVWQEAIEEHGLIMQALRERNAEQARAAMRRHMDIAFTRYSANLIR 231 + W A+ EH I++A+ R+A QA+AAM+RH+ ++ R + + R Sbjct: 198 EPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTMTR 246 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 94.4 bits (233), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 12/232 (5%) Query: 3 IEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEG 62 + I Q L ++ QL + I G F GS+LP+E LA Q GVSR +REA+ L+ EG Sbjct: 2 FQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEG 61 Query: 63 HIEVRMGSGIYVC-----PPVQRERRSDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQ 117 +E R GSG++V P+ R +++S E L+++ R IE EVA AA+ S + Sbjct: 62 VVEPRQGSGVFVTEQAGIKPL-RIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 Query: 118 QIAAVEEAYALMMAHAEAGIDPLEADRLFHIRLAEATGNSVLVG---LVTQLFDARLGPL 174 + A+E A A + AG D + AD FH LA+AT N + ++Q +A Sbjct: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT 180 Query: 175 FERLHSHFDGTRVWQEAIEEHGLIMQALRERNAEQARAAMRRHMDIAFTRYS 226 + D +R + EEH I++A+R + AR A + HM A R S Sbjct: 181 RGNEARYEDFSR---QVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLS 229 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 11/227 (4%) Query: 6 IEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIE 65 + P+R ++ + L IV+G VGS+LPSE DLA VSRP +R+AL L + +E Sbjct: 27 VRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 86 Query: 66 VRMGSGIYV-----CPPVQ--RERRSDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQ 118 GSG YV P Q E + + LEL R +IE E A AA ++Q Sbjct: 87 SLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLEL---RLVIEPECAAMAALRRNRQD 143 Query: 119 IAAVEEAYALMMAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQL-FDARLGPLFER 177 + +E A G D FH +A ATGN V ++ L +D R Sbjct: 144 LDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLR 203 Query: 178 LHSHFDGTRVWQEAIEEHGLIMQALRERNAEQARAAMRRHMDIAFTR 224 H + Q+A++EH I + +R ++AE AR AMR H++ A TR Sbjct: 204 HLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTR 250 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 24/227 (10%) Query: 7 EPQRLYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEV 66 +PQ L +++ L +I +G G +LP+E ++ GVSR +REA+ L+ G +E Sbjct: 16 KPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 Query: 67 RMGSGIYV----------CPPVQRERRSDLSGEEGPLELIRAREMIEGEVAYAAAQHGSK 116 R G G +V P DL L L+ R +E E A AA ++ Sbjct: 76 RHGIGTFVLEAKKGGNINIDPATITTMRDL------LALLELRISLETETAGLAAARRTE 129 Query: 117 QQIAAVEEAYALMMAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPL-F 175 +Q+ + EA L A+ + G D + D FH +A ATGN + +++ L +G + Sbjct: 130 EQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG---MGVIPR 186 Query: 176 ERLHS----HFDGTRVWQEAIEEHGLIMQALRERNAEQARAAMRRHM 218 +R+++ H EH I +A+ +AE ARAAMR H+ Sbjct: 187 KRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHL 233 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 767,703 Number of extensions: 32089 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 13 Length of query: 262 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 179 Effective length of database: 1,226,865 Effective search space: 219608835 Effective search space used: 219608835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)