BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3296.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspi...   313   5e-87
gi|300310708|ref|YP_003774800.1| cell wall invasion-associated h...   136   8e-34

>gi|300312625|ref|YP_003776717.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  313 bits (803), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 159/189 (84%), Positives = 166/189 (87%), Gaps = 4/189 (2%)

Query: 1   MAGRVRIESSRMAVLPSPLSWLAALAAALVLAAC----GTAPTAPPISRLPGAPQSQVPA 56
           M GRVRI S RMAV PS LS LAA   A+  A       T PTAPPI RLPGAPQSQ PA
Sbjct: 1   MTGRVRIASMRMAVAPSCLSPLAARCTAVCAALVLAACSTTPTAPPIERLPGAPQSQAPA 60

Query: 57  LPASDNGNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVTYIFGQAANYHISGSAADIAR 116
           LPA++NGNEVALYALSLIDTGYRFGGKNPSAGLDCSGMV+YIFGQAANY ISGSAADIAR
Sbjct: 61  LPATENGNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIAR 120

Query: 117 RGRQIDPAQLRAGDLVFFNTENRPFSHVGIYLGDGRFVHAPSTNGKVHISRMDNPYFSRR 176
           +GRQIDP+QLRAGDLVFFNT NRPFSHVGIYLGDGRFVHAPSTNGKVHI+RMDNPYFSRR
Sbjct: 121 QGRQIDPSQLRAGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRR 180

Query: 177 FEMARTYFN 185
           FEMARTYFN
Sbjct: 181 FEMARTYFN 189


>gi|300310708|ref|YP_003774800.1| cell wall invasion-associated
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  136 bits (343), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 111/184 (60%), Gaps = 7/184 (3%)

Query: 4   RVRIESSRMAVLPSPLSWLAALA--AALVLAACGTAP---TAPPISRLPGAPQSQVPALP 58
           R+R +++R   L + L W++A A  A L LAA    P   T+P   +L       +  L 
Sbjct: 8   RIRRQTARACALAAGL-WISASAHSADLSLAAQDLPPPQATSPQAQQLISKTNLAIARLQ 66

Query: 59  -ASDNGNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVTYIFGQAANYHISGSAADIARR 117
             ++  +E+A  AL+++   YR+GG +P  GLDCSG+V Y+F +A    +  ++ +I+R 
Sbjct: 67  DITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTSLEISRV 126

Query: 118 GRQIDPAQLRAGDLVFFNTENRPFSHVGIYLGDGRFVHAPSTNGKVHISRMDNPYFSRRF 177
           G +I    L+ GDLVF+NT  R FSHVGIYLGDG+F+H+PS  G+V I  MD  Y+ +RF
Sbjct: 127 GEKIGKDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKRF 186

Query: 178 EMAR 181
             AR
Sbjct: 187 NGAR 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 582,383
Number of extensions: 25298
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)