BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3293.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312622|ref|YP_003776714.1| nucleoside-diphosphate-sugar ep...   505   e-144

>gi|300312622|ref|YP_003776714.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  505 bits (1300), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/292 (90%), Positives = 281/292 (96%)

Query: 1   VKKLGLPRVLILGCGDVGLRLLPLLLPRYRVLAVTSQPGRCAELRAAGAVPVLADLDHPL 60
           +KKLGLPRVLILGCGDVGLRLLPLLLPRYRVLAVTS P RCAELRAAGAVP++ADLD P 
Sbjct: 1   MKKLGLPRVLILGCGDVGLRLLPLLLPRYRVLAVTSNPERCAELRAAGAVPIVADLDAPH 60

Query: 61  SLGRLARLAPTIVHLAPPQSEGRLDRRTRNLAAILPEGARLVYISTTGVYGDCAGASFDE 120
           +LGRLARLAPTIVHLAPPQSEGR+DRRTRNLAAILPEGARLVYISTTGVYGDCAGASFDE
Sbjct: 61  TLGRLARLAPTIVHLAPPQSEGRIDRRTRNLAAILPEGARLVYISTTGVYGDCAGASFDE 120

Query: 121 TRRVHPQNTRAVRRVDAETVLRAWARRRHGKLSILRVPGIYAVDRLPLERLHKGLPALSA 180
           TRRV+PQNTRAVRRVDAETVLRAWARRRHGKLSILRVPGIYA DRLPLERLHKGLPAL A
Sbjct: 121 TRRVNPQNTRAVRRVDAETVLRAWARRRHGKLSILRVPGIYAADRLPLERLHKGLPALLA 180

Query: 181 AEDVYTNHIHADDLARVAAAALRLGAPNRIYHAVDDSDLKMADYFDLVADAAGLSRPPRL 240
            EDV+TNHIHADDLARV+ AALRLGAPNR+YHAVDD++LKM DYFD VADAAGL+RPPRL
Sbjct: 181 QEDVHTNHIHADDLARVSLAALRLGAPNRLYHAVDDTELKMGDYFDAVADAAGLARPPRL 240

Query: 241 PRSELERNVSPMMLSFMSESRRLENRRIKEELGVRLRYPDVPSLLAQWKLTR 292
           PR+ELER+VSPMMLSFMSESRRL+NRRIKEELGVRLRYPDV SLL++WKLTR
Sbjct: 241 PRAELERSVSPMMLSFMSESRRLQNRRIKEELGVRLRYPDVQSLLSEWKLTR 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 809,211
Number of extensions: 29310
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)