BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3292.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 497 e-142 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 194 7e-51 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 188 4e-49 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 183 1e-47 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 181 6e-47 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 497 bits (1279), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/257 (94%), Positives = 248/257 (96%) Query: 1 MKLSFNNVAKRFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVA 60 MKLSFNNVAK FGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSG+VA Sbjct: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 61 GDDQAIRGPHPERTLMFQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKVKLK 120 GD Q IRGPHPERTLMFQENALYPWLTLQQNVALALEFQ V+K+ AAEQAR WLE VKLK Sbjct: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLK 120 Query: 121 GFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQG 180 GFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALR+LIRQQG Sbjct: 121 GFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQG 180 Query: 181 PTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAATRREILGLLG 240 PTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAA RR+IL LLG Sbjct: 181 PTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAAIRRDILCLLG 240 Query: 241 IHAEQDEFAKNLEGVGV 257 IHAEQDEFAKN+EGVGV Sbjct: 241 IHAEQDEFAKNIEGVGV 257 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 194 bits (493), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 102/230 (44%), Positives = 145/230 (63%), Gaps = 4/230 (1%) Query: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGDDQAIRGPHPERTLMF 77 +++ +I G+ V L+GPSGCGKSTLL+ AG PSSG + DD+ + P P+R ++F Sbjct: 29 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVF 88 Query: 78 QENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKVKLKGFEHYYPHQVSGGMRQR 137 QE AL+PW+T++QNVA LE +G K ++ L+K+ L F +P +SGGMRQR Sbjct: 89 QEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQR 148 Query: 138 AALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQGPTVVLVTHDVDEALFLA 197 A+AR +L+DEPFGALDALTR LQD L + + T+V VTH ++EA++LA Sbjct: 149 VAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLA 208 Query: 198 DRIFVFSPRPAKVLKEFNLVHHEKTHDLS--EFAATRREILGLLGIHAEQ 245 DRI V + RP V ++ LV+ + D + EF A +RE LG L + +Q Sbjct: 209 DRIVVMTYRPGTVKRDM-LVNLPRLRDPADPEFNALKRE-LGQLVMEEQQ 256 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 188 bits (478), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 98/228 (42%), Positives = 141/228 (61%), Gaps = 17/228 (7%) Query: 3 LSFNNVAKRFGDLHVIE--------------EFTREIASGELVALVGPSGCGKSTLLHMA 48 ++ +N+ +F D+H +E E +A GE V L+G SGCGKSTLL++ Sbjct: 1 MNMDNINGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLI 60 Query: 49 AGLEKPSSGTVAGDDQAIRGPHPERTLMFQENALYPWLTLQQNVALALE--FQGV-NKQV 105 AGL KPS G + ++ I GP PER ++FQ ++L PWL+ +N+ L +E F N+ Sbjct: 61 AGLLKPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQ 120 Query: 106 AAEQARTWLEKVKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTR 165 ++ R L V L E+ P+++SGGM+QR +ARA +PK LL+DEPFGALDALTR Sbjct: 121 LRDRTRAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTR 180 Query: 166 MTLQDALRELIRQQGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKE 213 LQD L +++ + TVV+VTHDVDEA+ L+DRI + + PA + E Sbjct: 181 AHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGE 228 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 183 bits (464), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 88/200 (44%), Positives = 129/200 (64%) Query: 15 LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGDDQAIRGPHPERT 74 +H ++ + +I +G V +G SGCGKSTLL+ AG S G ++ D Q + GP ER Sbjct: 19 VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERG 78 Query: 75 LMFQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKVKLKGFEHYYPHQVSGGM 134 ++FQ+++L PW ++Q NVAL L+F GV+K + E+A+ L V L+ F P+++SGGM Sbjct: 79 VVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGM 138 Query: 135 RQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQGPTVVLVTHDVDEAL 194 RQR LARA PK LL+DEPFGALD++TR +Q+ L + + G V +TH ++EAL Sbjct: 139 RQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEAL 198 Query: 195 FLADRIFVFSPRPAKVLKEF 214 FL + V SPRP +++ F Sbjct: 199 FLGTEVIVMSPRPGRIVARF 218 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 181 bits (458), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 94/213 (44%), Positives = 133/213 (62%), Gaps = 5/213 (2%) Query: 3 LSFNNVAKRF----GDLHV-IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSG 57 + NV+ RF G V + +F+ +A GE VA+VGP+GCGKST L + GL KP+ G Sbjct: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 Query: 58 TVAGDDQAIRGPHPERTLMFQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKV 117 V Q + G P +FQ +A++PW ++++NVA F+G K A A W+ +V Sbjct: 82 EVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRV 141 Query: 118 KLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIR 177 L F +YPHQ+SGGMR+R ALA+ FI+ P+ LL+DEPF ALD TR +QD L L Sbjct: 142 GLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWS 201 Query: 178 QQGPTVVLVTHDVDEALFLADRIFVFSPRPAKV 210 +VV VTHD++EA+ LAD+++V + RPA + Sbjct: 202 AHSGSVVFVTHDLEEAIALADKVYVLTARPATL 234 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 806,079 Number of extensions: 32806 Number of successful extensions: 516 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 327 Number of HSP's successfully gapped: 139 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)