BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3286.p
         (560 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312617|ref|YP_003776709.1| Na+(K+)/H+ antiporter protein [...  1031   0.0  

>gi|300312617|ref|YP_003776709.1| Na+(K+)/H+ antiporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 560

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/560 (96%), Positives = 552/560 (98%)

Query: 1   MEIVFTVLILLLAVAVSGVVARLAPFKLPLPLFQIALGAVLALPMFGLRISFDPELFLLL 60
           MEIVFTVLILLLAVAVSGVVARLAPFKLPLPLFQIALGAVLALPMFGLRISFDPELFLLL
Sbjct: 1   MEIVFTVLILLLAVAVSGVVARLAPFKLPLPLFQIALGAVLALPMFGLRISFDPELFLLL 60

Query: 61  FIPPLLFTDGWRMPKREFFRLARPILALALGLVMFTVVGVGYFIHWMIPVISLPSAFALA 120
           FIPPLLFTDGWRMPKREFFRLARPILALALGLVMFTVVGVGYFIHWMIPVISLPSAFALA
Sbjct: 61  FIPPLLFTDGWRMPKREFFRLARPILALALGLVMFTVVGVGYFIHWMIPVISLPSAFALA 120

Query: 121 AVLSPTDAVAVSSIVGKGRLPASMQHVLEGEALMNDASGLVAFKFAIAAVITGTFSLLDA 180
           AVLSPTDAVAVSSIVGKGRLPASMQHVLEGEALMNDASGLVAFKFAIAAVITGTFSLLDA
Sbjct: 121 AVLSPTDAVAVSSIVGKGRLPASMQHVLEGEALMNDASGLVAFKFAIAAVITGTFSLLDA 180

Query: 181 SISFVLIAAGGIAVGLIVAWGFGLIRRKIIEWAGDEPGIQVVLLLLIPFTAYIFAEHFGL 240
           SISFVLIAAGG+AVGLIVAWGFGLIRRKIIEWAGDEPGIQVVLLLLIPFTAYIFAEHFGL
Sbjct: 181 SISFVLIAAGGVAVGLIVAWGFGLIRRKIIEWAGDEPGIQVVLLLLIPFTAYIFAEHFGL 240

Query: 241 SGILAAVAGGMLMPYLETAGGESAATRLQGRSILTMLEFVFNGMSFLLLGLQLPGIVSLA 300
           SGIL AVA GMLMPYLETAGGESAATRLQGRSI+TMLEFVFNGMSFLLLGLQLPGIVSLA
Sbjct: 241 SGILGAVAAGMLMPYLETAGGESAATRLQGRSIMTMLEFVFNGMSFLLLGLQLPGIVSLA 300

Query: 301 HVDAQMAGNVPEWHLFVYILAITVALIVLRFVWVWVNLRMRRFASALRGQSGRNRKFDLR 360
           H+DA+MAGNVP WHLFVYI+AIT+AL+VLRFVWVW+NLRMRRFASALRGQSGRNRKFDLR
Sbjct: 301 HMDAKMAGNVPVWHLFVYIVAITLALVVLRFVWVWINLRMRRFASALRGQSGRNRKFDLR 360

Query: 361 LISITALSGVRGAITLAGVMSIPLLLKEHTPFPARDLLIFLATGVIICSLLFGSFLLPWL 420
           LISITALSGVRGAITLAGVMSIPLLLKEHTPFPARDLLIFLATGVI+CSLL GS LLPW+
Sbjct: 361 LISITALSGVRGAITLAGVMSIPLLLKEHTPFPARDLLIFLATGVIVCSLLLGSLLLPWM 420

Query: 421 LKDLQLDAEVKRRRAEEMMARLRLSEAAVRSIETAQERIGENLDESDLALLMEVSGSLLA 480
           LKDLQLDAEVKRRRAEEMMARLRLSEAAVRSIETAQERIG NLDE+DLALL EVSGSLLA
Sbjct: 421 LKDLQLDAEVKRRRAEEMMARLRLSEAAVRSIETAQERIGMNLDENDLALLTEVSGSLLA 480

Query: 481 TYRMRMNAESDSEETQRAANRFKQFERELRLEAVRAERLEVHYLRAEQRINDETFLMLIN 540
           TYRMRMNAESDSEETQRAANRFKQFERELRLEA+RAERLEVHYLRAEQRINDETFLMLIN
Sbjct: 481 TYRMRMNAESDSEETQRAANRFKQFERELRLEAIRAERLEVHYLRAEQRINDETFLMLIN 540

Query: 541 QIDMAETWLLGSLNGPGQHH 560
           QIDMAETWLLGSLN PGQHH
Sbjct: 541 QIDMAETWLLGSLNAPGQHH 560


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,438,501
Number of extensions: 55081
Number of successful extensions: 312
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 470
Effective length of database: 1,193,720
Effective search space: 561048400
Effective search space used: 561048400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 133 (55.8 bits)