BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3284.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312615|ref|YP_003776707.1| hypothetical protein Hsero_3318...   479   e-137

>gi|300312615|ref|YP_003776707.1| hypothetical protein Hsero_3318
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  479 bits (1234), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/282 (84%), Positives = 254/282 (90%), Gaps = 6/282 (2%)

Query: 1   MPETATALSATPAALSAAS------SALEVRLAARSGAFTGHTSGVASAHVQVNLAILPA 54
           MPETATALS  P   +         +ALEVRLAARSGAF+GHTSGVASAHVQVNLAILPA
Sbjct: 1   MPETATALSTAPHQPAPPPALSAASTALEVRLAARSGAFSGHTSGVASAHVQVNLAILPA 60

Query: 55  ALAADFREFCARNPVPCPLLGVSEPGSPALPGLGLDLDVRSDVPRYHVWRNGERVAEVND 114
           ALA DF  FC RNP+PCPLL VSEPGSPALP LGLDLDVRSDVPRYH+WR+GERVAEV+D
Sbjct: 61  ALADDFLAFCERNPIPCPLLAVSEPGSPALPALGLDLDVRSDVPRYHLWRHGERVAEVSD 120

Query: 115 LREYWREDLVSFALGCSFSFEHALLAAGIPLRHVSQGRNVAMYRTNLPTRAVGVFSGPTV 174
           LRE WR+DLV+FALGCSFSFEHALLAAGIPLRHVS+GRNVAMYRTN+PT+ VGVF GPTV
Sbjct: 121 LREVWRDDLVTFALGCSFSFEHALLAAGIPLRHVSEGRNVAMYRTNIPTQPVGVFQGPTV 180

Query: 175 VSMRPLKAADAIRAIQITARTPQVHGAPIHIGDPSLIGIADINQPDYGEAVAIHADELPV 234
           VSMRPLKAADAIRAIQITARTPQVHGAPIHIGDP+LIGIADI+ PDYGEAV I ADELPV
Sbjct: 181 VSMRPLKAADAIRAIQITARTPQVHGAPIHIGDPALIGIADIDHPDYGEAVDIRADELPV 240

Query: 235 FWACGVTPQAAIVAARPELCITHAPGYMLVTDKLNSELLDQP 276
           FWACGVTPQAAIVAARPE CITHAPGYMLVTDKLNSELL +P
Sbjct: 241 FWACGVTPQAAIVAARPEFCITHAPGYMLVTDKLNSELLLEP 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 895,033
Number of extensions: 40892
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)