BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3275.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310275|ref|YP_003774367.1| hypothetical protein Hsero_0942...    60   3e-10

>gi|300310275|ref|YP_003774367.1| hypothetical protein Hsero_0942
           [Herbaspirillum seropedicae SmR1]
          Length = 577

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 47/241 (19%)

Query: 1   MDWFWGVLKGDFEDEQTTGQIIVGTAISMIPVLDQIADIRDLIANFLHIRKDP---DDTW 57
           MDW   VL G+F D +    ++    +S +P +  +   RD +A  L +   P   +D  
Sbjct: 22  MDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAVILRMASHPEKREDIM 81

Query: 58  RWVALVITLIGL-VPV-----------------------LGSLLKGVFKIVFRFVKAGGT 93
            WV L   LI + +P+                       LG+ L+ V  ++ +       
Sbjct: 82  EWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSELGAALRSVMLLLIK------- 134

Query: 94  EAEKAIEAILALLRGAGKGDPVRFLKEL---PYDAYLKDVLKHFDDILNGLRKGIDKSID 150
           EA K +E ++  L+   KGD ++FL+ +   PY+  L   L+ F   L  + K +   ++
Sbjct: 135 EASKLVE-LVRFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGKLLSMVKSLRVHLE 193

Query: 151 YMSSRWLNWALGSTSRRLRLV---EQELQRLQRLGHEKIPDAMKALKAQVDKLLAHAKPA 207
            +S  + N        R+ ++   E++   +Q+    KIP A+  L A++ K+LA A P 
Sbjct: 194 SLS--YFNL----VKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKVLAEAAPQ 247

Query: 208 D 208
           +
Sbjct: 248 E 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,142,154
Number of extensions: 45771
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)