BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3274.p (1037 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 1383 0.0 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 394 e-110 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 336 5e-93 gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 335 9e-93 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 314 2e-86 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 1383 bits (3580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/918 (76%), Positives = 797/918 (86%), Gaps = 2/918 (0%) Query: 1 MPTLPASLLGAWHQSSRVMRLFMSPDSDAGLDGLMAEKLQAVETISPLLEGGDIDEAIAG 60 + LPA L GAW QS+RVMRL D D G LMAE+LQAVE + P + ID+AIAG Sbjct: 3 LSDLPA-LFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIAG 61 Query: 61 YRLQLSCLSLDAHLSLRKLIGQPVLLVLQTDGAARHFHGHITQSTLQGANGGMARYLLTI 120 YRLQLSCLSL+A +SLRKL+GQPVLL L TDG AR FHGH+T ++GANGGMARYLLTI Sbjct: 62 YRLQLSCLSLNADISLRKLLGQPVLLELDTDGGARAFHGHVTACRMEGANGGMARYLLTI 121 Query: 121 EPWLSFLRHRRDSAVYQDMTVPEVIEAVLRDYQGQGKLQPQWRLDLQDSSVYARRSLVTQ 180 EPWLSFLRHRRDSAV+QDM+ P +IEAV DY+GQG+LQP WRLDLQD+S YA+RSL TQ Sbjct: 122 EPWLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLATQ 181 Query: 181 YQESDLAFISRLLAEEGMFYYIEHQGHSNSPSLGAHTMVIADHNGSFKDNARASVAFSQS 240 YQE+DLAF++RL+ EEG+FYYIEHQG SNS SLG+HT+VIADHNGSFK NAR++VAF+Q+ Sbjct: 182 YQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQT 241 Query: 241 SAVMAQDSIDRWRSVRRWQTNAVEILTWDYRQAAVREATSATAADSGAPALALVSRDAPG 300 +AVMAQD+IDRWRSVRRWQTNAVEILTWDYRQ AVR A++A++ ++ L L SRDAPG Sbjct: 242 NAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGENAHDKLVLTSRDAPG 301 Query: 301 LYANENRVQAERQAKLQMQAIEVRNKIFTGAGTVRSFVPGTTFTLSGHADHVGGDNDRFV 360 Y NE+ QA+RQA QMQAIEVRNK+FTGAGTVRSF+PGTTFTL+GH DH GGD+D+FV Sbjct: 302 QYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDDQFV 361 Query: 361 LLRVVHQAHNNLNADLKSEVMTLLGQAVLADEDDQGSLLDAALNPAPGEARPVYRNRFEA 420 LLRVVHQAHNNL+ADLK+ V LLGQA L D D +GSLLD AL A +ARPVYRNRFEA Sbjct: 362 LLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLDTALRSADTQARPVYRNRFEA 421 Query: 421 IRDKIPYRPLLTAADGQALYAKPTVTGQQTAVVVGAQGQAVHTDRDNRVRVQFHWQRGER 480 IR+KIPYRPLL A G+ LY KP GQQ+AVVVGAQGQAVHTDRDNR+RVQFHWQRGER Sbjct: 422 IRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNRIRVQFHWQRGER 481 Query: 481 SHSGLSSPAPDDHSGAPANEASGTWVRVLAGLAPTAGANWGGQAVPRIGQEVLIDFIEGD 540 SHSGLSSP PDDH GAPANE +GTWVRVLAGLAPTAGANWGGQAVPR+GQEVLIDFIEGD Sbjct: 482 SHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEGD 541 Query: 541 IDRPVVIGTLYNGKGLANAQGNQAGQGAGAATGNAPAWFPGDSDAHHHAAVLSGIKTQAM 600 IDRPVVIGTLYNG+G+ NAQGNQAGQGAG+ATGNAPAWFPG S AH+HAAVLSGIKTQA+ Sbjct: 542 IDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQAL 601 Query: 601 SASQGGAGAYQQLVFDDTPGQSRASLQQHTDAHDGASELNLGALRQQTDNQRLAATGQGF 660 SASQ G G Y QLVFDD+PGQ+RA+LQQH DAHDGASELNLG LRQQTDNQRLA TGQGF Sbjct: 602 SASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLATTGQGF 661 Query: 661 ELKTRYSAAVRAGQGLLVSTEKSSGAQLDVRGALSQLADSVEKQKQLAETAQKHNAKFDG 720 ELKT YSAA+RAGQGLLVSTEKS AQLD+ LSQL++S +KQ+QLAETAQKHNA+ +G Sbjct: 662 ELKTLYSAALRAGQGLLVSTEKSISAQLDMTQGLSQLSESAQKQQQLAETAQKHNARLEG 721 Query: 721 EAEASKLPAVESLAQSVEVLKASATASAGNSSGGDDGSEGASSAAPAFSAPQLQLSSPAG 780 E++A+KLPAVE++ +S+EVLKA+ +AS SSG D A++A AFSAPQLQLSSPAG Sbjct: 722 ESDAAKLPAVEAMGESIEVLKATQSAST-GSSGSDGQGSSATTATTAFSAPQLQLSSPAG 780 Query: 781 IAATTPASAILAAGVTSSVTAGKDINQIAQGNLHHLAQSGISLFTYGKVSNSSKPVQDSG 840 IAA TPASAI+AAGVTSSVTAGKDINQIAQGNLH+L++SGISLFTYGK SN SKP Q++G Sbjct: 781 IAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETG 840 Query: 841 IALHAASGKVSVHSQSGTTMLTSAKQLTVASVGQDVQITGKQHVKFAAQGAWLKLEGNNI 900 +ALHAA+GKVSV SQ+G T+LTSAKQLTVASVG+DV + GKQHV+ AAQGAWL+LEG NI Sbjct: 841 MALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKQHVQLAAQGAWLRLEGGNI 900 Query: 901 EVHGPGAMEFKASAKELT 918 EVHGPGAMEF+ASAKELT Sbjct: 901 EVHGPGAMEFRASAKELT 918 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust. Identities = 311/975 (31%), Positives = 473/975 (48%), Gaps = 114/975 (11%) Query: 14 QSSRVMRLFMSPDSDAGL-DGLMAEKLQAVETISPLLEGGDIDEAIAGYRLQLSCLSLDA 72 Q++R++ M+ AGL + L E+ + E+++ +R + LS+ Sbjct: 23 QNARLIT--MTTAQSAGLPETLAVERFEGEESVND------------NFRFDIDALSIST 68 Query: 73 HLSLRKLIGQPV-LLVLQTDGAARHFHGHITQSTLQGANGGMARYLLTIEPWLSFLRHRR 131 L L++ IG + L +LQ DG R +HG+ TQ++ GA+GG+ARY L +E +L+FL R Sbjct: 69 DLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRH 128 Query: 132 DSAVYQDMTVPEVIEAVLRDYQGQGKLQPQWRLDLQDSSVYARRSLVTQYQESDLAFISR 191 DS ++QDMTV ++ AVL++Y PQ L+ + A+R + TQY+E+D AF+ R Sbjct: 129 DSFLFQDMTVTDIAAAVLKEY-------PQANFSLEVTQTLAKRDICTQYRETDYAFLRR 181 Query: 192 LLAEEGMFYYIEH------QGHSNSPSLGAHTMVIADHNGSFK--DNARASVAFSQSSAV 243 +LA EG+ + EH Q H S H +VI D N + F + +A+ Sbjct: 182 ILASEGLNFRFEHEQDDATQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIRFHRVAAM 241 Query: 244 MAQDSIDRWRSVRRWQTNAVEILTWDYRQAAVREATSATAADSGA-PALALVSRDAPGLY 302 A D+I + +VR + N V + +W + + + D+G P+L + D G Sbjct: 242 EASDAITDFAAVRSVRPNGVALASWHPEKLSSPSHEEGSTLDAGELPSLPVY--DGTGQQ 299 Query: 303 ANENRVQAERQAKLQMQAIEVRNKIFTGAGTVRSFVPGTTFTLSGHADHVGGDNDRFVLL 362 ++ A A+L +QA+E++NK F GAG R G FTL H + G+N F ++ Sbjct: 300 DFADQDAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERYPEGEN-AFKVV 358 Query: 363 RVVHQAHNNLNADLKSEVM----TLLGQAVLADEDDQGSLLDAALNPAPGEARPVYRNRF 418 V H A NN++A++ + L G + A+ DD L A YRN F Sbjct: 359 SVRHAARNNVSANITRILAPAAGALFGGSAAAERDDD---LQAG----------TYRNSF 405 Query: 419 EAIRDKIPYRPLLTAADGQALYAKPTVTGQQTAVVVGAQGQAVHTDRDNRVRVQFHWQRG 478 AIRD +P P AA + L KPT G QTA+V GA AV TDR++RV+VQFHWQRG Sbjct: 406 TAIRDSVPMVP---AAIAERL--KPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRG 460 Query: 479 ERSHSG--LSSPAPDDHSG-APANEASGTWVRVLAGLAPTAGANWGGQAVPRIGQEVLID 535 + + G + DD G A N++SGTW+RV +G NWG Q +PR+G EVL+D Sbjct: 461 KSPNPGGLRETGNLDDKDGNANGNDSSGTWIRVAEA---QSGPNWGSQFIPRVGSEVLVD 517 Query: 536 FIEGDIDRPVVIGTLYNGKGLANAQGNQAGQGAGAATGNAPAWFPGDSDAHHHAAVLSGI 595 FIEGDIDRPVV+ LYNG +AP + G +HA +SG Sbjct: 518 FIEGDIDRPVVVAQLYNGS-------------------DAPPFPAGADSGINHAGSISGW 558 Query: 596 KTQAMSASQGGAGAYQQLVFDDTPGQSRASLQQHTDAHDGASELNLGALRQQTDN--QRL 653 + A S + Q V DDT Q R L T S+LNLG L +Q D QR Sbjct: 559 HSTAHDGS-----GFNQWVVDDTQSQLRMRLASST----AKSQLNLGHLVEQADTGAQRG 609 Query: 654 AATGQGFELKTRYSAAVRAGQGLLVSTE-------KSSGAQLDVRGALSQLADSVEKQKQ 706 + GQGFEL++ VR G+GLL+ST +G Q+D GA++QL + + Sbjct: 610 SYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAIAQLKGAKSLAQT 669 Query: 707 LAETAQKHNAKFDGEAEASKLPAVESLAQSVEVLKASATASAGNSSGGDDGSEGASSAAP 766 ++++A + A +A +K + +L + K A+ + ++ D + +A P Sbjct: 670 MSDSATQQQALSSTQALQAKTDFL-ALIDPSDQGKHPASVNGQDALKSDGSTRNTDAAQP 728 Query: 767 A--FSAPQLQLSSPAGIAATTPASAILAAGVTSSVTAGKDINQIAQGNLHHLAQSGISLF 824 F+ + + SP+ I T+ AS +L A +++ QG++H A S Sbjct: 729 VEKFAKAAVLMDSPSSINWTSNASTLL--------YAAENLQWTTQGDVHWSAADTASAA 780 Query: 825 TYGKVSNSSKPVQDSGIALHAASGKVSVHSQSGTTMLTSAKQLTVASVGQDVQITGKQHV 884 S S D GI AA+G VS+ + + + + K +TV SV ++I +Q + Sbjct: 781 AGKAASFYS---HDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQKI 837 Query: 885 KFAAQGAWLKLEGNNIEVHGPGAMEFKASAKELTGPQRSLAAYPILPRVQHIKPWLGIER 944 A A + LEG NI PG K + G LP ++ Sbjct: 838 VLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYKLFDEAFVV 897 Query: 945 KYFDGSPVEGAPFKV 959 K +G+P+ P+++ Sbjct: 898 KDPNGTPLSDIPYRI 912 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 336 bits (862), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 305/1002 (30%), Positives = 453/1002 (45%), Gaps = 168/1002 (16%) Query: 14 QSSRVMRLFMSPDSDAGLDGLMAEKLQAVETISPLLEGGDIDEAIAGYRLQLSCLSLDAH 73 Q R+++L DS G D L+ +++ E + GY + +S Sbjct: 30 QEKRILKL----DSVLGPDVLLPQRMVGSERLG------------RGYDYTIDLVSTRDD 73 Query: 74 LSLRKLIGQPVLLVLQTDGAARH-FHGHITQSTLQGANGGMARYLLTIEPWLSFLRHRRD 132 + L+KLI QPV L LQ DG+ HG++ + G++G +A + + + PWL FL++R+D Sbjct: 74 IELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRKD 133 Query: 133 SAVYQDMTVPEVIEAVLRDYQGQGKLQPQWRLDLQDSSVYARRSLVTQYQESDLAFISRL 192 + ++QD +++ V + + +R ++ ++ RS TQY E+D F+ RL Sbjct: 134 ARIWQDSKADDILADV---FDQHAYARGNYRFEIVTPAL--PRSYCTQY-ETDWHFVQRL 187 Query: 193 LAEEGMFYYIEHQGHSNSPSLGAHTMVIADHNGSFKDNARASVAFSQSSAVMAQDSIDR- 251 + EEG + Y H P H +VI D+ K A +AF + QD ++R Sbjct: 188 MEEEGWYAY-----HEQKPDGSGHVLVITDNTDQAKPLAPEQLAFHGAGT---QDEVNRI 239 Query: 252 --WRSVRRWQTNAVEILTWDYRQAAVREATSATA-ADSGAPALALVSRDAPGLYANENRV 308 W + R + + T DY+ ++ T + GA L + G Y+ + Sbjct: 240 LHWSASRGLASTRLATRTDDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQD 299 Query: 309 QAERQAKLQMQAIEVRNKIFTGAGTVRSFVPGTTFTLSGHADHVGGD--NDRFVLLRVVH 366 +RQA+L+++ E K F G R+ G FTL+ H H G + +F+L+ V Sbjct: 300 DGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEW 359 Query: 367 QAHNNLNADLKSEVMTLLGQAVLADEDDQGSL---LDA-------ALNPAPGEARPVYR- 415 NNL L G A D GSL LDA + + A G AR + Sbjct: 360 FIENNL---------PLSGTA----RDFPGSLKPQLDAFKASMGRSNDDAGGNARTGHCF 406 Query: 416 NRFEAIRDKIPYRPLLTAADGQALYAKPTVTGQQTAVVVGAQGQAVHTDRDNRVRVQFHW 475 NRFE R K+PYR + KP V QTAVVVG QG+ V TD+ NRV+VQF W Sbjct: 407 NRFEVQRRKLPYRSPFD-------HTKP-VMHPQTAVVVGPQGEEVFTDKLNRVKVQFRW 458 Query: 476 QRGERSHSGLSSPAPDDHSGAPANEASGTWVRVLAGLAPTAGANWGGQAVPRIGQEVLID 535 R P +E + WVRV P AG NWG VPR+GQE++I Sbjct: 459 DRIN-----------------PGDEKASCWVRVSY---PNAGENWGEVKVPRVGQELIIS 498 Query: 536 FIEGDIDRPVVIGTLYNGKGLANAQGNQAGQGAGAATGNAPAWFPGDSDAHHHAAVLSGI 595 F+ GD DRPV G L+N + P W H LSG+ Sbjct: 499 FLNGDPDRPVATGRLFNQE-------------------QPPQW--------HTDGRLSGL 531 Query: 596 KTQAMSASQGGAGAYQQLVFDDTPGQSRASLQQHTDAHDGASELNLGALRQQTDNQRLAA 655 K++ G + QLV DDT Q+R H + ++LNLG L Q DN+R Sbjct: 532 KSKEF-----GGNGFNQLVMDDTTSQNRV----HLYSSQSNAQLNLGYLVSQADNERRNF 582 Query: 656 TGQGFELKTRYSAAVRAGQGLLVST---EKSSGAQLDVRGALSQLADSVEKQKQLAETAQ 712 G GF L T AV +GL +S+ G QLD A S + S + + L+++A Sbjct: 583 YGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDASEATSLMKASADLARGLSDSAS 642 Query: 713 KHNAKFDGEAEASKLPAVESLAQSVEVLKASATASAGNSSGGDDGSEGASSAAPAFSAPQ 772 + A E+LAQ + LK A+ SG GS A F P Sbjct: 643 RAGA--------------EALAQ--DSLKDFVDATEDKYSGQGQGS------ANRFKKPL 680 Query: 773 LQLSSPAGIAATTPASAILAAGVTSSVTAGKDINQIAQGNLHHLAQSGISLFTYGKVSNS 832 L +++PAGI T + + +++T+GKD + + +L + ISLF Sbjct: 681 LMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLF-------- 732 Query: 833 SKPVQDSGIALHAASGKVSVHSQSGTTMLTSAKQLTVASVGQDVQITGKQHVKFAAQGAW 892 Q++G+ L AA GKV + +QS L + K + S V+I K V +A G++ Sbjct: 733 ---AQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSF 789 Query: 893 LKLEGNNIEVHGPGAMEFKASAKELTGPQRSLAAYPILPRVQ--HIKPWLGIERKYFD-G 949 +++ I PG E KAS + GP + ++P VQ ++P R D G Sbjct: 790 IQINSAGITQGTPGKWEAKASLHSMPGPA---SQNFVMPHVQKSELQPSDMEFRHLTDWG 846 Query: 950 SPVEGAPFKVTFADGSVQRGRLNSDGKARLDDVPPGP-AKIE 990 P+ GA +K +DGSV++G L++ G ARL VP G AK+E Sbjct: 847 EPLAGAAYKAILSDGSVRKGTLDAQGIARLSGVPAGTSAKVE 888 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 335 bits (860), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 306/963 (31%), Positives = 445/963 (46%), Gaps = 145/963 (15%) Query: 64 QLSCLSLDAHLSLRKLIGQPVLLVLQ-TDGAARHFHGHITQSTLQGANGGMARYLLTIEP 122 ++ LSLDA L L+ LIGQ LV +DG+ F G + ++ G+ GG+ARY L I P Sbjct: 49 EVIVLSLDAGLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVP 108 Query: 123 WLSFLRHRRDSAVYQDMTVPEVIEAVLRDYQGQGKLQPQWRLDLQDSSVYAR---RSLVT 179 W+ L +S V+QD TV +++E V DY W + + + RS Sbjct: 109 WVWLLSQSHNSRVWQDKTVIDIVEDVFADYAPHAA----WTWTDEVAPFMQQVQPRSYTI 164 Query: 180 QYQESDLAFISRLLAEEGMFYYIEHQGHSNSPSLGAHTMVIADHNG--SFKDNARAS--- 234 QY+ES+LAF+SRLLA EG+ + +E + S G ++ AD +F ++ ++ Sbjct: 165 QYRESNLAFVSRLLAAEGLSWRVEESADAAS---GHRLVLFADSTSPRAFPEDLTSTSPL 221 Query: 235 ----VAFSQSSAVMAQDSIDRWRSVRRWQTNAVEILTWDYR-QAAVREATSATAADSGAP 289 + F +A QDSI + R Q + +L++DY+ + AV + G Sbjct: 222 GGSGIRFHAGTAREEQDSIQALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKD 281 Query: 290 ALALVSRDAPGLYANENRVQAERQAKLQMQAIEVRNKIFTGAGTVRSFVPGTTFTLS--- 346 A L S D+PGLYA + +A+ A+L ++A E RNK++ TVR+ PGT FTL+ Sbjct: 282 APRLESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGP 341 Query: 347 -GHADHVGGDNDRFVLLRVVHQAHNNLNAD-------LKSEVMTLLGQAVLADEDDQGSL 398 G + G ++ +L V+ NNL D L + LL V A E+ Q SL Sbjct: 342 LGLSAAQDGAPRQYAVLSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQ-SL 400 Query: 399 LDAALNP-------------APGEARPV-YRNRFEAIRDKIPYRPLLTAADGQALYAKPT 444 L P +AR + Y N FEAIR + +RP+L G L+A+ T Sbjct: 401 LHGQSGPDSLQLLGQTDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARAT 460 Query: 445 VTGQQTAVVVGAQGQA-------VHTDRDNRVRVQFHWQRGERSHSGLSSPAPDDHSGAP 497 G Q+A+VVG QG+ +H DR RVR++FHWQ G Sbjct: 461 ARGSQSAIVVGPQGETSASSAGEIHCDRLGRVRIRFHWQ------------------GRN 502 Query: 498 ANEASGTWVRVLAGLAPTAGANWGGQAVPRIGQEVLIDFIEGDIDRPVVIGTLYNGKG-- 555 + A+ WVRV A A + GA G Q +PRIGQEVL+ FIE DIDRPV++G LYNG+G Sbjct: 503 NDAAATCWVRV-AQRAASGGA--GMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEG 559 Query: 556 ----------------------------LANAQGNQAGQGAGAATGNAPAWFPG--DSDA 585 A+ QGN AG GNAP W G DSD Sbjct: 560 AAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAG-------GNAPTWHGGSQDSDG 612 Query: 586 HHHAAVLSGIKTQAMSASQGGAGAYQQLVFDDTPGQSRASLQQHTDAHDGASELNLGALR 645 H + A GI+++ GG+G Y Q+VFDDT Q R L+ SELNLG L Sbjct: 613 HGNTAAQWGIRSKEF----GGSG-YNQIVFDDTDAQGRIQLK----TTQSGSELNLGHLI 663 Query: 646 QQTDNQRLAATGQGFELKTRYSAAVRAGQGLLVSTEK------SSGAQLDVRGALSQLAD 699 DN R + G G EL+T A+RAG G+L S+ K S D G ++ L Sbjct: 664 HTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALLKQ 723 Query: 700 SVEKQKQLAETAQKHN----AKFDGEAEASKLPAVESLAQSVEVLKASATASAGNS---S 752 + K E H A G +AS + A +E ++ +A+ S S Sbjct: 724 AALLGKTFNEATLTHKTVGLASHLGPTQASA-STINDSAAPLEAIRVAASGMVDGSPENS 782 Query: 753 GGD---DGSEGASSAAPAFSAPQLQLSSPAGIAATTPASAILAAGVTSSVTAGKDINQIA 809 G D ++ S P +A + +++ G+ A LA G T ++ +G D Q+A Sbjct: 783 GADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVA 842 Query: 810 QGNLHHLAQSGISLFTYGKVSNSSKPVQDSGIALHAASGKVSVHSQSGTTMLTSAKQLTV 869 GN + L +SG +L + + +G+ + AA + V +Q+ + + Q+ V Sbjct: 843 -GNQYRL-RSGQALGVLAGAMAAGE--GGTGLQMIAAQKNIDVQAQADGLTVQARDQVRV 898 Query: 870 ASVGQDVQITGKQHVKFA-AQGAWLKLEGNNIEVHGPGAMEFKASAKELTGPQRSLAAYP 928 S V + + + A GA + +EG NI V PG + A+ K GP P Sbjct: 899 ISANAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLP 958 Query: 929 ILP 931 +P Sbjct: 959 QMP 961 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 314 bits (805), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 288/985 (29%), Positives = 426/985 (43%), Gaps = 164/985 (16%) Query: 20 RLFMSPDSDAGLDGLMAEKLQAVETISPLLEGGDIDEAIAGYRLQLSCLSLDAHLSLRKL 79 R + DS G D L+ ++L A E ++ GY + + L+ ++L +L Sbjct: 20 RRLLQLDSSLGPDILLPQRLVATERLN------------DGYEVTIDLLATHTGIALEQL 67 Query: 80 IGQPV-LLVLQTDGAARHFHGHITQSTLQGANGGMARYLLTIEPWLSFLRHRRDSAVYQD 138 I QPV L + Q DG HG++ + G++G + L++ PWL FLR R+D+ ++QD Sbjct: 68 IAQPVTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQD 127 Query: 139 MTVPEVIEAVLRDY-QGQGKLQPQWRLDLQDSSVYARRSLVTQYQESDLAFISRLLAEEG 197 +++ V ++ Q +G +R L+ Y R TQY E+D F+ RL+ EEG Sbjct: 128 KRTEDILADVFNNHPQARG----HYRFQLERP--YTPRPYCTQY-ETDWHFVQRLMEEEG 180 Query: 198 MFYYIEHQGHSNSPSLGAHTMVIADHNGSFKDNARASVAFSQSSAVMAQDSIDRWRSVRR 257 F + H H +VI D+ + + +AF ++ D I W + R Sbjct: 181 WFAH-----HEQREDGSGHVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRT 235 Query: 258 WQTNAVEILTWDYRQAAVR-EATSATAADSGAPALALVSRDAPGLYANENRVQAERQAKL 316 + + DY+ ++ EA + G L + G Y+ + Q RQA L Sbjct: 236 LSSKGWRGRSDDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADL 295 Query: 317 QMQAIEVRNKIFTGAGTVRSFVPGTTFTLSGHADHVGG-DNDR-FVLLRVVHQAHNNLNA 374 Q++ E + ++ VR+ G F L H H D +R FV+L + NNL Sbjct: 296 QVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNL-- 353 Query: 375 DLKSEVMTLLGQAVLADEDDQGSLLDAALNPAPGEARPVYR----------NRFEAIRDK 424 L + + G +G+L+ A + R V NRFE R K Sbjct: 354 PLSHQALDFPGSL-------KGALM--AFKESIRRERQVAETDNEHTGHCFNRFEVQRRK 404 Query: 425 IPYRPLLTAADGQALYAKPTVTGQQTAVVVGAQGQAVHTDRDNRVRVQFHWQRGERSHSG 484 +P+RP +A+P V QTA+VVG + V+TD +R++VQF W R Sbjct: 405 LPFRPARA-------HARP-VMLPQTAIVVGPASEEVYTDHLDRIKVQFRWDRIN----- 451 Query: 485 LSSPAPDDHSGAPANEASGTWVRVLAGLAPTAGANWGGQAVPRIGQEVLIDFIEGDIDRP 544 P NEA+ WVRV P AG WG VPRIGQEV++ F+ GD DRP Sbjct: 452 ------------PGNEAASCWVRVSY---PNAGQYWGAIQVPRIGQEVIVSFLNGDPDRP 496 Query: 545 VVIGTLYNGKGLANAQGNQAGQGAGAATGNAPAWFPGDSDAHHHAAVLSGIKTQAMSASQ 604 VV G L+N + P W H LSG+K++ Sbjct: 497 VVTGRLFNAE-------------------QRPQW--------HTNGRLSGVKSKEF---- 525 Query: 605 GGAGAYQQLVFDDTPGQSRASLQQHTDAHDGASELNLGALRQQTDNQRLAATGQGFELKT 664 GG G + Q+V DDTP Q+R L T+ H ++LNLG L QT N+R + G GF L T Sbjct: 526 GGTG-FNQMVMDDTPEQNRIHLYS-TNTH---AQLNLGHLVSQTGNERRSFFGSGFALST 580 Query: 665 RYSAAVRAGQGLLVSTEKSSGA---QLDVRGALSQLADSVEKQKQLAETAQKHNAKFDGE 721 A+ +GL +ST GA QLD R A QL + L+ETA K Sbjct: 581 DAYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSETAAK-------- 632 Query: 722 AEASKLPAVESLAQSVEVLKASATASAGNSSGGDDGSEGASSAAPAFSAPQLQLSSPAGI 781 A A L E+L ++ +A D + + + A F L +SP GI Sbjct: 633 AGAEPLAGQEALRDFIDATQA-------------DYEDPSQAQANRFQQAILLAASPDGI 679 Query: 782 AATTPASAILAAGVTSSVTAGKDINQIAQGNLHHLAQSGISLFTYGKVSNSSKPVQDSGI 841 TTP AG ++++G D + +L ISLF + +GI Sbjct: 680 GLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAF-----------KAGI 728 Query: 842 ALHAASGKVSVHSQSGTTMLTSAKQLTVASVGQDVQITGKQHVKFAAQGAWLKLEGNNIE 901 L +A GKV V +QS L + K + S V+I K+ V A G++++L + I Sbjct: 729 KLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFIRLNASGIT 788 Query: 902 VHGPGAMEFKASAKELTGP-------QRSLAAYPILPRVQHIKPWLGIERKYFDGSPVEG 954 GA E KA + GP +S AA P + R +D SPV+ Sbjct: 789 QGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALPFDEEF--------VLRWPYDQSPVKN 840 Query: 955 APFKVTFADGSVQRGRLNSDGKARL 979 F++ DG+ RG ++ GK L Sbjct: 841 RRFEIVRGDGTKVRGVTDAQGKTGL 865 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,021,155 Number of extensions: 125723 Number of successful extensions: 433 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 10 Length of query: 1037 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 942 Effective length of database: 1,170,045 Effective search space: 1102182390 Effective search space used: 1102182390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 136 (57.0 bits)