BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3273.p (381 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC trans... 593 e-171 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 216 2e-57 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 203 2e-53 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 202 3e-53 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 202 4e-53 >gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 434 Score = 593 bits (1530), Expect = e-171, Method: Compositional matrix adjust. Identities = 310/389 (79%), Positives = 331/389 (85%), Gaps = 20/389 (5%) Query: 2 QPPRQTRIVTISSSLPMFLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKT 61 Q P QTRIVTIS S+PMFLEVEHLSIRYPRT AVDAVSLRL PGELGALIGPSGSGKT Sbjct: 6 QTPSQTRIVTISLSMPMFLEVEHLSIRYPRTPAPAVDAVSLRLAPGELGALIGPSGSGKT 65 Query: 62 SLLRAVAGLEPAQAGRILLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFG 121 SLLRAVAGLEPAQAG I LDGQLLEG GVRV AE RRIGMVFQDFALFPHL+VA NI FG Sbjct: 66 SLLRAVAGLEPAQAGLIRLDGQLLEGGGVRVPAEQRRIGMVFQDFALFPHLNVADNIAFG 125 Query: 122 LRGMARTQREQIVTQMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPF 181 LRG + +R IV ML LVGLPEAG KFPHQLSGGQQQRIALARALAPQPRLLLLDEPF Sbjct: 126 LRGRDKRERSAIVAGMLALVGLPEAGAKFPHQLSGGQQQRIALARALAPQPRLLLLDEPF 185 Query: 182 SSLDVELRERLAHDVRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYAL 241 SSLDVELRERLAHDVRDILKRT TTALMVTHDQ+EAFAVADVVGVMR G+LEQWD+PYAL Sbjct: 186 SSLDVELRERLAHDVRDILKRTHTTALMVTHDQMEAFAVADVVGVMRQGQLEQWDTPYAL 245 Query: 242 YHRPATRFAADFIGHGVLLRGQL------------QPVTT----GASPQIEVQTAAGLLR 285 YHRPATRFAADFIGHGVLL+GQL +P T +IEV+TAAGLLR Sbjct: 246 YHRPATRFAADFIGHGVLLQGQLRGPDANAQALASRPATDHHQGDEQEEIEVETAAGLLR 305 Query: 286 GIPLQA----PSPSPTQVDVLLRADDVLHDDASPFKARVLRKSFRGAQFLYTLALENGQQ 341 G+PL A + ++VDVLLRADDV+HDDASPF+ARV+RKSFRGA+FLYTLALENGQ Sbjct: 306 GVPLHALHGQQAAQTSEVDVLLRADDVIHDDASPFRARVVRKSFRGAEFLYTLALENGQT 365 Query: 342 LLSLVPSHHDHAIGEWIGIRLDVTHLVTF 370 LLSL PSHHDHA+GEWIGIRL+VTHLVTF Sbjct: 366 LLSLAPSHHDHAVGEWIGIRLEVTHLVTF 394 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 216 bits (551), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 146/336 (43%), Positives = 206/336 (61%), Gaps = 18/336 (5%) Query: 18 MFLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGR 77 +FL V + R+ + A+D VSL ++ GE+ L+GPSG GKT+LLR +AGLE +GR Sbjct: 11 VFLSVREVEKRF--GSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGR 68 Query: 78 ILLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGLRGMARTQREQIVTQM 137 + DG+ D ++ +AR G++FQ +ALFP+L VA N+ +GL M+R Q+ + VT+M Sbjct: 69 LHADGR----DISQLPPQARDYGILFQSYALFPNLSVADNVAYGLGRMSRQQKRERVTEM 124 Query: 138 LDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVR 197 L +VGL + K+P QLSGGQQQR+ALARALAP P LLLLDEP S+LD ++RE L ++R Sbjct: 125 LSMVGLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIR 184 Query: 198 DILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADFIGHG 257 + K+ T LMVTHDQ EA +AD + VM+HGR+EQ+ +P +Y RPAT F ADFIG Sbjct: 185 RLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQA 244 Query: 258 VLLRGQLQPVTTGASPQIEVQTAAGLLRGIPLQAPSPSPTQVDVLLRADDVLHDD--ASP 315 L P T + Q+ V GL I + ++ A + D+ A+ Sbjct: 245 NWL-----PFTRLSGSQVAV---GGLHLEIQPDESDRASGRLFCRPEAVQLFSDESCANR 296 Query: 316 FKARVLRKSFRGAQFLYTLALEN--GQQLLSLVPSH 349 F ARV+ + + G ++ LA + GQ LL+ V S Sbjct: 297 FLARVVDRIYLGDRYRLALAADALPGQTLLADVSSQ 332 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/244 (47%), Positives = 165/244 (67%), Gaps = 10/244 (4%) Query: 20 LEVEHLSIRYPRTATAA--VDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGR 77 L V L + Y A A + VS+ LQ GE+ AL+GPSGSGKT+LLRAVAGLE +AG Sbjct: 4 LSVNDLHLDYGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGA 63 Query: 78 ILLDGQLLEGDGVR---VAAEARRIGMVFQDFALFPHLDVAANIGFGLRGMARTQREQIV 134 I + G+ DG R + AE R +G+VFQ +AL+PH VA N+ +GL+ + +T +I Sbjct: 64 IDI-GKRRVFDGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLK-LRKTPSGEIA 121 Query: 135 TQM---LDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRER 191 T++ L +GL G ++PHQLSGGQQQR+A+ARAL P+++LLDEP S+LD +LRE Sbjct: 122 TRVKAVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREE 181 Query: 192 LAHDVRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAA 251 +R+++ R G +ALMVTHDQ EA A++D + ++ +GR+EQ +P ++Y P T F A Sbjct: 182 ARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTA 241 Query: 252 DFIG 255 +F+G Sbjct: 242 EFMG 245 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 202 bits (515), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 117/254 (46%), Positives = 162/254 (63%), Gaps = 12/254 (4%) Query: 18 MFLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGR 77 M +EV H+ R+ + A++ VSL GEL AL+GPSG GKT+LLR +AGLE +G+ Sbjct: 1 MSIEVHHIQKRF--GSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQ 58 Query: 78 ILLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGLRGMARTQR------E 131 +LLDG+ VR R++G VFQ +ALF H+ V NI FGLR R+QR Sbjct: 59 VLLDGEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIR 114 Query: 132 QIVTQMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRER 191 + V ++L+LV L ++P QLSGGQ+QRIALARALA +PR+LLLDEPF +LD ++R+ Sbjct: 115 EKVKRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 192 LAHDVRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAA 251 L +R + T++ VTHDQ EA VAD V +M G++EQ +P A+Y+ PA+ F Sbjct: 175 LRRWLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVY 234 Query: 252 DFIGHGVLLRGQLQ 265 F+G+ L G+L Sbjct: 235 GFLGNVNLFHGRLH 248 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 202 bits (513), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 207/372 (55%), Gaps = 38/372 (10%) Query: 23 EHLSIRYPRTA------TAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLE-PAQA 75 E +SIR + A T A+ + L++ PGE L+GPSG GKT+ LR +AGLE P + Sbjct: 6 EAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEG 65 Query: 76 GRILLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGL--RGMARTQREQI 133 GR+L E D + E R +GMVFQ++ALFP++ V NI +G+ R +A +R + Sbjct: 66 GRVLFG----EEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAER 121 Query: 134 VTQMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLA 193 V ++L++V L + QLSGGQ+QR+ALARALA +PR+LLLDEP ++LD +LRE + Sbjct: 122 VERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVR 181 Query: 194 HDVRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADF 253 D+ +L+ G TA+ VTHDQ EA A+ D + VM G++ Q +P +Y+ PA F A+F Sbjct: 182 SDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEF 241 Query: 254 IG-----HGVLLRGQLQPVTTGASP----QIEVQTAAGLLRGIPLQAPSPSPTQVDVLLR 304 IG G++ +LQ + TG P + Q A L R P V+V+ Sbjct: 242 IGAMNRVDGIVAGDRLQ-LPTGTLPLPPDAVAGQPAQALFR----------PEDVEVI-- 288 Query: 305 ADDVLHDDASPFKARVLRKSFRGAQFLYTLALENGQQLLSLVPSHHDHAIGEWIGIRLDV 364 D+ DA + +++ F G + + + + + +++ G+ I IR+ Sbjct: 289 --DITEADAHCLRGKLINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPA 346 Query: 365 THLVTF-PGAAE 375 T LVT P AA+ Sbjct: 347 TALVTMAPRAAK 358 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,224,921 Number of extensions: 54123 Number of successful extensions: 624 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 403 Number of HSP's successfully gapped: 146 Length of query: 381 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 294 Effective length of database: 1,207,925 Effective search space: 355129950 Effective search space used: 355129950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)