BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3272.p
         (555 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease [...   848   0.0  

>gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/555 (88%), Positives = 516/555 (92%), Gaps = 8/555 (1%)

Query: 1   MHIIALLAVLIALPLLGILAAWLGLDAAGVDSLRQQAQTVLPGYLATSGWLALLVPLGVV 60
           MH I LLAVLIALP+LGIL AW GLDA G+D+LRQQA+TVLPGYLATSGWLAL+V LGVV
Sbjct: 1   MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV 60

Query: 61  LVGGATAVTVSLFEFRGRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGLVQSTLRGWFPG 120
           +VGGATAVTVSLFEFRGRRW SWALLLPMAMPAYVSAYAYTDFLQYAG+VQSTLRGWFPG
Sbjct: 61  VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG 120

Query: 121 WRMDVRGLPGAICMFVFTLYPYAYLLARNALCERGTHLMEAARMLGTPLSARIVRVALPL 180
           +RM+VRGLPGAICMFV TLYPYAYLLARNAL ERGTHLMEAARMLG PLS RIVRVALPL
Sbjct: 121 FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL 180

Query: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVA 240
           ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFV 
Sbjct: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT 240

Query: 241 LLLWLERREQGRMRFAASRGGRGSDGAEARLPRLSRGPTLLAWLVCALPVVLGFLLPVAI 300
           +LLWLERREQGRMRFAA+RGGRG DGAEARLP LSR  T LAWLVC LPVVLGF+LPVAI
Sbjct: 241 VLLWLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALAWLVCGLPVVLGFVLPVAI 300

Query: 301 LLHLWWGELGRAPAGLDIAAPAFDLGRYAGWVWNSFRFGGLAAFIAIGLALALCFALRAG 360
           LL LWW E G+           FD+GRYAGWVWNSFRFGG+AA  AI LALALCFALR+G
Sbjct: 301 LLRLWWSEAGQ--------GMGFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALRSG 352

Query: 361 GLPRLQGALLRLTARLAGMGYAIPGSVIAVGILLPVAWLQALWPAAGLGVLLTATSLGVI 420
           GLPRLQ ALLRLTARLAGMGYAIPGSVIAVGILLPVAWLQ+LWP AGLGVLLTA+SLGVI
Sbjct: 353 GLPRLQAALLRLTARLAGMGYAIPGSVIAVGILLPVAWLQSLWPGAGLGVLLTASSLGVI 412

Query: 421 YAYLVRFTAVAVQSVESGYTRIPASLDEAARTLGSSRAVIAWRLHMPLLWRSLAVAALMV 480
           YAYLVRFTAVAVQSVESGYTRIPASLDEAAR+LGSSRAVIAWR+HMPLLWRSLAVAALMV
Sbjct: 413 YAYLVRFTAVAVQSVESGYTRIPASLDEAARSLGSSRAVIAWRVHMPLLWRSLAVAALMV 472

Query: 481 FVDVVKELPATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRAL 540
           FVDVVKELPATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRAL
Sbjct: 473 FVDVVKELPATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRAL 532

Query: 541 DGRRTEHVQSAVPPA 555
           DG+R++ +Q+A PPA
Sbjct: 533 DGKRSQPLQNAAPPA 547


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,411,343
Number of extensions: 53137
Number of successful extensions: 386
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 4
Length of query: 555
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 465
Effective length of database: 1,193,720
Effective search space: 555079800
Effective search space used: 555079800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)