BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3270.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312607|ref|YP_003776699.1| phospholipase A1 protein [Herba...   734   0.0  

>gi|300312607|ref|YP_003776699.1| phospholipase A1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/425 (83%), Positives = 389/425 (91%)

Query: 7   PRRRLALLLCSLGAPLYLATPAQAGIALVQPPKRIDASKPLELTLLVTEDEQAQRSYTLP 66
           P R +AL LC+LG  L +  PA AGI LVQPPKRID SKPLELTLLV+E++Q +R+YTLP
Sbjct: 14  PLRSVALALCALGGSLLIGMPAHAGITLVQPPKRIDVSKPLELTLLVSEEDQPERTYTLP 73

Query: 67  ATLLVAASADMIPPQQIALQRIDGSDSLTLKQGELRKVHYRGVLPERLRGMVRIEPIGID 126
           +TLLVAASADMIPPQQI+LQR+D   S+TL+QG+ RK+ YRG+LPERLRGMVRIEPIG+D
Sbjct: 74  STLLVAASADMIPPQQISLQRVDSEGSITLRQGQFRKLRYRGMLPERLRGMVRIEPIGMD 133

Query: 127 AAPVLVAVVRPDAALGPLAASPDLINAPLADSSSKVAPVAPSATVLTPGANASPLDSAPA 186
           AAPVLVAVVRPDAALG L  SPDLIN PLADSSS VAPVAPSATV TPGA+ASPLDSAPA
Sbjct: 134 AAPVLVAVVRPDAALGALPESPDLINTPLADSSSTVAPVAPSATVFTPGADASPLDSAPA 193

Query: 187 AEDILSNNRRLSFNEPMYFTVGHNQGETHARFQLSFKFRLFVPDDPRSRGLLDNLYLGYT 246
           AEDILSNNRRLSFNEPMYF+VG++ G+T+ARFQLS KFRLFVPDDPRSRG LDNLYLGYT
Sbjct: 194 AEDILSNNRRLSFNEPMYFSVGNSGGDTNARFQLSLKFRLFVPDDPRSRGPLDNLYLGYT 253

Query: 247 QFSLWDLSVPSAPFRDTSYRPSLYYYLPDVGIQNRIFSRIGIATGLEHESNGRDGTASRS 306
           QFSLWDLS PSAPFRDTSYRPSL+YYLPDVGIQNR+ SRIGIATGLEHESNGRDG  SRS
Sbjct: 254 QFSLWDLSAPSAPFRDTSYRPSLFYYLPDVGIQNRVLSRIGIATGLEHESNGRDGAQSRS 313

Query: 307 INTYFIEPTFNFGNLNDYHFKVTPKVYAYLGPTRDNPDIGDYRGHLDLKLAYGKPDGVEV 366
           INTYFIEP+FNFGNLNDYHFKV PKVYAYLGPTRDNPDIGDYRGH+DLKL+YGKPDG+EV
Sbjct: 314 INTYFIEPSFNFGNLNDYHFKVAPKVYAYLGPTRDNPDIGDYRGHMDLKLSYGKPDGLEV 373

Query: 367 ATMLRKGRLGGKYSAETQVTYPLSRLLPGTAGYLMASYFYGYGESLLTYNQKDHPQLRIG 426
           ATMLRKGRLGG  +++TQV+YPLSRLLPGTAGYLMASYF+GYGESLLTYNQKD  Q RIG
Sbjct: 374 ATMLRKGRLGGTLTSQTQVSYPLSRLLPGTAGYLMASYFHGYGESLLTYNQKDRAQFRIG 433

Query: 427 YALWR 431
           YALWR
Sbjct: 434 YALWR 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,377,122
Number of extensions: 59863
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)