BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3266.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312603|ref|YP_003776695.1| TRP repressor binding protein [...   403   e-114

>gi|300312603|ref|YP_003776695.1| TRP repressor binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score =  403 bits (1035), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/209 (92%), Positives = 203/209 (97%)

Query: 3   TSSTAVNVSANATILVLYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTVTEAVE 62
           TSSTAVN ++NATILVLYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTV EAVE
Sbjct: 6   TSSTAVNAASNATILVLYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTVAEAVE 65

Query: 63  PEVPGSGAPYVEASDLQDCAGLALGSPTRFGNMAAAMKYFWDGTSPQWLSGALAGKPACV 122
           P+VP SGAPYVEASDL++C GLALGSPTRFGNMAAAMKYFWDGT+PQWLSGAL GKPACV
Sbjct: 66  PDVPASGAPYVEASDLEECDGLALGSPTRFGNMAAAMKYFWDGTAPQWLSGALTGKPACV 125

Query: 123 FTSTGSLHGGQESTLLSMMLPLLHHGMLLLGLPYSHPELMNTTSGGTPYGASHWAGVNGN 182
           FTSTGSLHGGQE+TLLSMM+PLLHHGMLL+GLPYSHPELMNT SGGTPYGASHWAGVNGN
Sbjct: 126 FTSTGSLHGGQEATLLSMMIPLLHHGMLLVGLPYSHPELMNTHSGGTPYGASHWAGVNGN 185

Query: 183 QPLSDDSRTLAIALGKRLAENAIKLRRPS 211
           QPLSDDSRTLAIALGKRLAENAIKLRRPS
Sbjct: 186 QPLSDDSRTLAIALGKRLAENAIKLRRPS 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 652,215
Number of extensions: 25921
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)