BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3265.p
         (461 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane p...   783   0.0  

>gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/466 (89%), Positives = 435/466 (93%), Gaps = 5/466 (1%)

Query: 1   MSSLRVSLSRMRGLTRQQLSDLLRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALAL 60
           MS +R+SLSRMRGLTR+QLSDLLRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALAL
Sbjct: 1   MSPVRISLSRMRGLTREQLSDLLRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALAL 60

Query: 61  FTAFPLFSTFRASLEAYFVDNLMPKGVANTILGYLNQFAAKSARISAVGGVLLILTSVLT 120
           FTAFPLFSTFRASLEAYFV+NLMPKGVANTILGYLNQFAAKSARISAVGGV+LILTSVLT
Sbjct: 61  FTAFPLFSTFRASLEAYFVENLMPKGVANTILGYLNQFAAKSARISAVGGVVLILTSVLT 120

Query: 121 MSTIESVFNQIWRVKKSRPLVQRVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLP 180
           MSTIESVFNQIWRVKKSRPLVQRVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLP
Sbjct: 121 MSTIESVFNQIWRVKKSRPLVQRVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLP 180

Query: 181 WLGASFYTLVSLMFSTLAYTLLYSTVPNQTVDWRDAAAGGLLAGIGLEIAKRLFAAYILK 240
           WLGASFYTLVSLMFSTLAYTLLYSTVPNQTVDWRDA AGGLLAGIGLEIAKRLFA YILK
Sbjct: 181 WLGASFYTLVSLMFSTLAYTLLYSTVPNQTVDWRDALAGGLLAGIGLEIAKRLFAVYILK 240

Query: 241 FPTYTMVYGTVAVLPIFLVWIYMMWMVTLFGALLTAALPVVRYERWWHVPSPGAEFIDAV 300
           FPTYTMVYGTVAVLPIFLVWIYMMWM+TLFGALLTAALPVVRYERWWHV SPGAEFIDA+
Sbjct: 241 FPTYTMVYGTVAVLPIFLVWIYMMWMITLFGALLTAALPVVRYERWWHVASPGAEFIDAI 300

Query: 301 KVLKCLHAARVGVDSAVVSMEEVRRATKLGLGELQQLLARMSEEGWVASVKPDTRARSGW 360
           KVL+ LHAARVGV+SAVVSM+EVRRAT+LGLGELQQLLARMSEEGWVASVKP    RS W
Sbjct: 301 KVLRFLHAARVGVESAVVSMDEVRRATRLGLGELQQLLARMSEEGWVASVKPGNSRRSSW 360

Query: 361 NRRITDDMDRWTLAANPGTIQLARVYRLFVFDPAVLAQAGEEETLVTRVEEAINAVLAQS 420
           NRRITDDMDRWTL ANP TIQLARVYRLFVFDPAVLAQAGEEE LV RVE AI+AVLAQS
Sbjct: 361 NRRITDDMDRWTLVANPSTIQLARVYRLFVFDPAVLAQAGEEEGLVHRVEGAIDAVLAQS 420

Query: 421 LEEYCQGGRAADQAVQE-----AAAAVTAMPYAAVPLEQRRRMWER 461
           LE+YC    A   A++E     AA+A  A PYAAVPL +RRR+WER
Sbjct: 421 LEDYCSADAARRAALEEQAMEAAASAPAATPYAAVPLAERRRIWER 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,241,667
Number of extensions: 46703
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,203,190
Effective search space: 448789870
Effective search space used: 448789870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)