BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3262.p (629 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312599|ref|YP_003776691.1| major facilitator superfamily p... 1194 0.0 gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate ... 61 3e-10 gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate ... 58 2e-09 >gi|300312599|ref|YP_003776691.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 629 Score = 1194 bits (3089), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/629 (93%), Positives = 608/629 (96%) Query: 1 MQKKSQFTLFAQRRFAPFFWTQFLGALNDNVFKTALLTILTYDALSWTDMDPGLLNNLIP 60 MQK SQFTLF QRRFAPFFWTQFLGALNDNVFKTALLTILTYDALSWTD+DPGLLNNLIP Sbjct: 1 MQKNSQFTLFTQRRFAPFFWTQFLGALNDNVFKTALLTILTYDALSWTDLDPGLLNNLIP 60 Query: 61 GLFILPFFLFSATSGQLADKLEKGRMARAVKLLEIVIMAIAAYGWMTHHLVLLIAAVIGM 120 GLFILPFFLFSATSGQLADKLEKGR+AR VKLLEI IM IAAYGWMTHHL LL+AAVIGM Sbjct: 61 GLFILPFFLFSATSGQLADKLEKGRVARFVKLLEIAIMGIAAYGWMTHHLWLLVAAVIGM 120 Query: 121 GIHSTLFGPVKYAYLPQQLRQDELVGGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLV 180 G+HSTLFGPVKYAYLPQQLR++EL+GGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLV Sbjct: 121 GVHSTLFGPVKYAYLPQQLRREELIGGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLV 180 Query: 181 AGVTIGIAVLGWLASLRIPLSPAPVPELKVNWNPFTETVRNIGFSRRNRPVFLSLLGNSW 240 AG+TIGIAVLGWLASLRIPLSPAPVPELKVNWNPFTETVRN+ +SRRNRPVFLSLLGNSW Sbjct: 181 AGMTIGIAVLGWLASLRIPLSPAPVPELKVNWNPFTETVRNLAYSRRNRPVFLSLLGNSW 240 Query: 241 FWFYGAIMLAQFPVYAKNYLHGDHGVFVLLLAVFSVGIGAGSLLCERLSGHKVEIGLVPF 300 FWFYGAIMLAQFPVYAKNYLHGDH VFVLLLAVFSVGIGAGSLLCERLSGHKVEIGLVPF Sbjct: 241 FWFYGAIMLAQFPVYAKNYLHGDHSVFVLLLAVFSVGIGAGSLLCERLSGHKVEIGLVPF 300 Query: 301 GSIGLSVFGLELYFASQAYVTPAAMLDVAGFLAQGGSWRILGDCLGIGLFGGLYIVPLFA 360 GSIGLSVFGLELYFASQAYVTP AMLD+ GFLAQGGSWRIL DCLGIG+FGGLYIVPLFA Sbjct: 301 GSIGLSVFGLELYFASQAYVTPTAMLDLGGFLAQGGSWRILIDCLGIGVFGGLYIVPLFA 360 Query: 361 LIQTRCDPAHVSRTIAGMNIMNALFMVVSALVAMVLLKAGLTIPQIFLATAIMNGVVAVY 420 LIQTRCDPAHVSRTIAGMNIMNALFMVVSALVAMVLLKAGL+IPQIFLATAIMNGVVA Y Sbjct: 361 LIQTRCDPAHVSRTIAGMNIMNALFMVVSALVAMVLLKAGLSIPQIFLATAIMNGVVAAY 420 Query: 421 IFSLVPEFLIRFLAWILIHTFYRVRIVNGQAIPDQGPAVLVCNHVSYVDAIAIMAASPRP 480 IFSLVPEFLIRFLAWILIHTFYRVRI+NGQAIP+QGPAVLVCNHVSYVDAIAIMAASPRP Sbjct: 421 IFSLVPEFLIRFLAWILIHTFYRVRIINGQAIPEQGPAVLVCNHVSYVDAIAIMAASPRP 480 Query: 481 VRFVMDYQIFKIPLMSWLFRNVRAIPIAPVKADPWLTEKAFVDIAQALHEGELVCIFPEG 540 VRFVMD+QIF+IP+MSWLFRNVRAIPIAPVK DPWLTEKAFVDIAQALHEGELVCIFPEG Sbjct: 481 VRFVMDHQIFRIPVMSWLFRNVRAIPIAPVKEDPWLTEKAFVDIAQALHEGELVCIFPEG 540 Query: 541 KLTRDGELNPFKGGVQKIIDRTPVPVLPLALRGLWGSLFSRDPSNPVTRTFKRGLFSRLE 600 KLTRDGELNPFKGGVQKII R+PVPVLP+ALRGLWGSLFSRDPSNPV RTFKRGLFSRLE Sbjct: 541 KLTRDGELNPFKGGVQKIIARSPVPVLPMALRGLWGSLFSRDPSNPVARTFKRGLFSRLE 600 Query: 601 LVAGEPIAADQVSPELLQEKVRELRGDWK 629 L GE I +QVSPELLQEKVRELRG WK Sbjct: 601 LAVGEAIPPEQVSPELLQEKVRELRGQWK 629 >gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Herbaspirillum seropedicae SmR1] Length = 267 Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 20/185 (10%) Query: 443 RVRIVNGQAIPDQGPAVLVCNHVSYVDAIAIMAASPRPVRFVMDYQIFKIPLMSWLFRNV 502 R I + +PD P +L+ H S + I + PRP+ FV ++ +P W + Sbjct: 65 RYEIRGAENLPD-APVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYVPFFGWGIALL 123 Query: 503 RAIPIAPVKADPWLTEKAFVDI----AQALHEGELVCIFPEGKLTRDGELNPFKGGVQKI 558 R IPI K AF + + L +G+ + +FPEG T G +K G ++ Sbjct: 124 RMIPIDRKKG-----RDAFAQVLEHGTRRLRDGQWIMMFPEGTRTTVGSQGKYKAGGSRL 178 Query: 559 IDRTPVPVLPLALRGLWGSLFSRDPSNPVTRTFKRGLFSRLELVAGEPIAADQVSPELLQ 618 T V+P+A+ G + + + K GL + + G+PI+ + ++P+ L Sbjct: 179 AVETNTLVVPIAMNS--GQCWPKG-----SFIKKPGLIT---VSIGKPISPEGLNPQELN 228 Query: 619 EKVRE 623 E+V Sbjct: 229 ERVEN 233 >gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 7/129 (5%) Query: 444 VRIVNGQAIPDQGPAVLVCNHVSYVDAIAIMAASPRPVRFVMDYQIFKIPLMSWLFRNVR 503 +RI + IP ++LV NHVS++D A+ S +P RFV +I PL+ WL Sbjct: 51 IRIDSPLPIPR---SLLVSNHVSWLDIFAVN--SLQPCRFVAKSEIRSWPLIGWLCAKTG 105 Query: 504 AIPIAPVKADPWLTEKAFVDIAQALHEGELVCIFPEGKLTRDGELNPFKGGVQKIIDRTP 563 I I+ KA + F + +++ + E V FPEG G L PF + + Sbjct: 106 TIFISRGKASD--VRRIFKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAK 163 Query: 564 VPVLPLALR 572 PV P ALR Sbjct: 164 APVQPYALR 172 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.144 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,027,048 Number of extensions: 91592 Number of successful extensions: 394 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 392 Number of HSP's successfully gapped: 6 Length of query: 629 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 538 Effective length of database: 1,188,985 Effective search space: 639673930 Effective search space used: 639673930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)