BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3261.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312598|ref|YP_003776690.1| chorismate synthase [Herbaspiri...   704   0.0  

>gi|300312598|ref|YP_003776690.1| chorismate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/362 (96%), Positives = 357/362 (98%)

Query: 1   MSGNTLGTLFTVTTFGESHGPAIGCVIDGCPPGMTLSEADIQPELDRRRPGTSRHVTQRQ 60
           MSGNT G LFTVTTFGESHGPAIGCVIDGCPPGMTLSEADIQPELDRRRPGTSRHVTQRQ
Sbjct: 1   MSGNTFGKLFTVTTFGESHGPAIGCVIDGCPPGMTLSEADIQPELDRRRPGTSRHVTQRQ 60

Query: 61  EPDTVEILSGVYEGKTTGTPIALLIRNQDQRSKDYGNILDTFRPGHADYTYWHKYGIRDP 120
           EPDTVEILSG YEGKTTGTPIALLIRNQDQRSKDYGNILDTFRPGHADYTYWHKYGIRDP
Sbjct: 61  EPDTVEILSGTYEGKTTGTPIALLIRNQDQRSKDYGNILDTFRPGHADYTYWHKYGIRDP 120

Query: 121 RGGGRSSARLTAPVVGAAAIAKKWLFEKYGTTFKGCMSQLGEIAIPFESWEHVPNNPFFA 180
           RGGGRSSARLTAPVVGAAA+AKKWLFE+YGTTFKGCMSQLGEIAIPFESWEHVPNNPFFA
Sbjct: 121 RGGGRSSARLTAPVVGAAAVAKKWLFEQYGTTFKGCMSQLGEIAIPFESWEHVPNNPFFA 180

Query: 181 ANASLIERLEEYMDALRKDGDSIGARIDVVAQNVPVGLGEPLYDKLDAEIAFALMGINAV 240
           ANAS+IERLE YMDALRKDGDSIGARIDVVAQNVPVGLGEPLYDKLDAEIAFALMGINAV
Sbjct: 181 ANASIIERLEAYMDALRKDGDSIGARIDVVAQNVPVGLGEPLYDKLDAEIAFALMGINAV 240

Query: 241 KGVEIGAGFRAVAQKGSEHGDALTPQGFVGNNAGGILGGISTGQDITASIAIKPTSSIRT 300
           KGVEIGAGFR+VAQKGSEHGDALTP+GFVGNNAGG+LGGISTGQDITASIAIKPTSSIRT
Sbjct: 241 KGVEIGAGFRSVAQKGSEHGDALTPEGFVGNNAGGVLGGISTGQDITASIAIKPTSSIRT 300

Query: 301 PRPSIDKNGQQISVETFGRHDPCVGIRATPIAEAMLALVLMDHALRHRAQCGDVKVDTPV 360
           PRPSIDK+GQ I+VETFGRHDPCVGIRATPIAEAMLALVLMDHALRHRAQCGDVKVDTPV
Sbjct: 301 PRPSIDKSGQPIAVETFGRHDPCVGIRATPIAEAMLALVLMDHALRHRAQCGDVKVDTPV 360

Query: 361 LR 362
           LR
Sbjct: 361 LR 362


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,233,672
Number of extensions: 55483
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)