BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3255.p
         (889 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembl...  1020   0.0  

>gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembly
           FimV protein [Herbaspirillum seropedicae SmR1]
          Length = 896

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/896 (74%), Positives = 719/896 (80%), Gaps = 20/896 (2%)

Query: 1   MKNLSAAIALTLALPLGAHAAGLGKLTVLSALGQPLRAEIEVTSVSAEEAGKLTARLAPA 60
           +K LSAA+AL LA+PLGA AA LGKLTVLSALGQPLRAEIEVT+VSAEEAGKL+A+LAPA
Sbjct: 14  IKTLSAAVALALAVPLGAQAASLGKLTVLSALGQPLRAEIEVTAVSAEEAGKLSAKLAPA 73

Query: 61  EAFRRANMDYNPVLSSLSFVIEQRQGRHFIRISSSQPVSDPFVDLLLELSAGNARQMREY 120
           EAFRRAN+DYNPVL SLSF +EQRQGRHFIRISSSQPVSDPFVDLLLELSAG++R +REY
Sbjct: 74  EAFRRANVDYNPVLGSLSFAVEQRQGRHFIRISSSQPVSDPFVDLLLELSAGDSRLIREY 133

Query: 121 TFLLDPADSKTPRNAQVAPLTPGNAPA-ATTPAAAPAAAPATPAAVAPAAEPTPAAAPVA 179
           TFLLDPADSK+PRNAQVAPLTP NA   A    AA A A    AA    A      A  A
Sbjct: 134 TFLLDPADSKSPRNAQVAPLTPSNAVGAAAKGEAAAAPAAPAAAAEPAPAPAAATQAAAA 193

Query: 180 APAAPVAAATPAPAATPAAPAASAPSSAPIPISGEEPAASIVQRPAPSALAEELIRRQQA 239
           A  AP AA+    AA  AA  A+  SSAPIP+S EEPA++IVQRPAPSALAEELIRRQQA
Sbjct: 194 AAPAPAAASASTTAAPAAAAPAAPTSSAPIPVSSEEPASNIVQRPAPSALAEELIRRQQA 253

Query: 240 SPDNTPASASPDAVAAASSASGSVKPAAAAPAGSAAAPAGKSGEYRVKPGDTLAGIATRN 299
           +PD+TPASASP A A A+           A   +AAAPAGK+G+YRVKPGDTLAGIA RN
Sbjct: 254 APDSTPASASPSAAAPAAPVQ-------GATGQAAAAPAGKTGDYRVKPGDTLAGIAARN 306

Query: 300 QPANVSLDQMLIALYRANPDAFQGNNINRLRAGKILAIPDQPSAAAVDRDEARSMVVAQA 359
           Q ANVSLDQMLIALYRANPDAF GNNINRLRAGKIL+IPDQP+AAAVD+ EAR MVVAQA
Sbjct: 307 QQANVSLDQMLIALYRANPDAFMGNNINRLRAGKILSIPDQPTAAAVDQTEARGMVVAQA 366

Query: 360 QDFNAYRNKLAGQVANAPAGKPGSSRHSGGGKITTRVEERAGNQDARDRLELSRANKGRG 419
           QDFNAYRNKLAGQVA+APAGKPG+SR SGGGKITTRVEER+G Q+ARDRLELSRANKGRG
Sbjct: 367 QDFNAYRNKLAGQVASAPAGKPGASRQSGGGKITTRVEERSGAQEARDRLELSRANKGRG 426

Query: 420 KTGN-TGTAAEDKAASERALAEANDRVKDLEKNVDNLQKLLELKNKTIAEMSAQQQKPAD 478
           KTGN    AAEDKAA+ERALAEANDRVKDLEKNVDNLQKLLELKNKTIA++SAQQ++   
Sbjct: 427 KTGNAGAAAAEDKAAAERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLSAQQKEAKP 486

Query: 479 AAKPAVADNGAAKAENQPAEA---ATPTPAPTPAPAAATTPQPVASAKPTDKGDKSGGSF 535
            +  A A   AA AE +PAE    A   PA      A                +KSGGSF
Sbjct: 487 ESPAAAA--PAANAEVKPAEGATPAADAPAAAAPAPAPAPAPAATPPMAAKPAEKSGGSF 544

Query: 536 LDKVKENPYIVAGAGVLVALLAAGGGVLAMRRRKKKTEDGPTEPTIEPEPAPAPAPEPAA 595
           +DK+KENPY++AGAGVLVALLA GGGVLAMRRRKKK E    EP +EPEPA  P PEP A
Sbjct: 545 VDKIKENPYVLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVEPEPASVPEPEPVA 604

Query: 596 AIAEPSPEPVAEAPAAEVAEAEPVAAAAPV-EEAPVDPIAEADMYIAYGRDEQAEDILKL 654
           A     PEP   A  A  A AEPVA A  V EEAPVDPI EADMYIAYGRDEQAEDILKL
Sbjct: 605 AAVAAEPEPPVSAEPAVEAVAEPVAVAETVAEEAPVDPITEADMYIAYGRDEQAEDILKL 664

Query: 655 ALQTQPERQALHSKLLEIYAKRGDVANFNRVALNLHALSGGLNEAWVKAAALGLELDPTN 714
           ALQTQPERQALH+KLLEIYAKR DVA FNRVALNLHALSGGLNE WVKAAALGLE+DPTN
Sbjct: 665 ALQTQPERQALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWVKAAALGLEIDPTN 724

Query: 715 PLYGGTPAEPEPVVAEEPGMEFDLSDFKGAELQPEPVATAAAAAAPMDLGKDIDFDLDLE 774
           PLYGG P        EE GMEFDL DFK AE++    A A  A APMDLGKDIDFDLDLE
Sbjct: 725 PLYGGQPEPEPEPEPEEAGMEFDLDDFKSAEIR----ADATPAPAPMDLGKDIDFDLDLE 780

Query: 775 NGAKPDASEPILPASSGATSASMLLDSMDDVPAATSLSDLDLSLPEESTA-PSATNLLEE 833
           NGAKPDA EP+LPAS+ A SAS LLDS+DD P A+SLSDLDLSLP+E++A PSATNLLEE
Sbjct: 781 NGAKPDADEPLLPASTAAASASTLLDSLDDQPQASSLSDLDLSLPDEASAPPSATNLLEE 840

Query: 834 DEESAFEQEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQIARAKQMMAALG 889
           DEESAFE EMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQ+ARAKQMMA LG
Sbjct: 841 DEESAFEAEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKQMMAGLG 896


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,797,508
Number of extensions: 60692
Number of successful extensions: 387
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 11
Length of query: 889
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 795
Effective length of database: 1,174,780
Effective search space: 933950100
Effective search space used: 933950100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 135 (56.6 bits)