BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3254.p
         (902 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembl...  1037   0.0  

>gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembly
           FimV protein [Herbaspirillum seropedicae SmR1]
          Length = 896

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/909 (74%), Positives = 729/909 (80%), Gaps = 20/909 (2%)

Query: 1   MPVNTNKKLPRSQMKNLSAAIALTLALPLGAHAAGLGKLTVLSALGQPLRAEIEVTSVSA 60
           MP+NTNKK   SQ+K LSAA+AL LA+PLGA AA LGKLTVLSALGQPLRAEIEVT+VSA
Sbjct: 1   MPLNTNKKPHLSQIKTLSAAVALALAVPLGAQAASLGKLTVLSALGQPLRAEIEVTAVSA 60

Query: 61  EEAGKLTARLAPAEAFRRANMDYNPVLSSLSFVIEQRQGRHFIRISSSQPVSDPFVDLLL 120
           EEAGKL+A+LAPAEAFRRAN+DYNPVL SLSF +EQRQGRHFIRISSSQPVSDPFVDLLL
Sbjct: 61  EEAGKLSAKLAPAEAFRRANVDYNPVLGSLSFAVEQRQGRHFIRISSSQPVSDPFVDLLL 120

Query: 121 ELSAGNARQMREYTFLLDPADSKTPRNAQVAPLTPGNAPA-ATTPAAAPAAAPATPAAVA 179
           ELSAG++R +REYTFLLDPADSK+PRNAQVAPLTP NA   A    AA A A    AA  
Sbjct: 121 ELSAGDSRLIREYTFLLDPADSKSPRNAQVAPLTPSNAVGAAAKGEAAAAPAAPAAAAEP 180

Query: 180 PAAEPTPAAAPVAAPAAPVAAATPAPAATPAAPAASAPSSAPIPISGEEPAASIVQRPAP 239
             A      A  AA  AP AA+    AA  AA  A+  SSAPIP+S EEPA++IVQRPAP
Sbjct: 181 APAPAAATQAAAAAAPAPAAASASTTAAPAAAAPAAPTSSAPIPVSSEEPASNIVQRPAP 240

Query: 240 SALAEELIRRQQASPDNTPASASPDAVAAASSASGSVKPAAAAPAGSAAAPAGKSGEYRV 299
           SALAEELIRRQQA+PD+TPASASP A A A+           A   +AAAPAGK+G+YRV
Sbjct: 241 SALAEELIRRQQAAPDSTPASASPSAAAPAAPVQ-------GATGQAAAAPAGKTGDYRV 293

Query: 300 KPGDTLAGIATRNQPANVSLDQMLIALYRANPDAFQGNNINRLRAGKILAIPDQPSAAAV 359
           KPGDTLAGIA RNQ ANVSLDQMLIALYRANPDAF GNNINRLRAGKIL+IPDQP+AAAV
Sbjct: 294 KPGDTLAGIAARNQQANVSLDQMLIALYRANPDAFMGNNINRLRAGKILSIPDQPTAAAV 353

Query: 360 DRDEARSMVVAQAQDFNAYRNKLAGQVANAPAGKPGSSRHSGGGKITTRVEERAGNQDAR 419
           D+ EAR MVVAQAQDFNAYRNKLAGQVA+APAGKPG+SR SGGGKITTRVEER+G Q+AR
Sbjct: 354 DQTEARGMVVAQAQDFNAYRNKLAGQVASAPAGKPGASRQSGGGKITTRVEERSGAQEAR 413

Query: 420 DRLELSRANKGRGKTGN-TGTAAEDKAASERALAEANDRVKDLEKNVDNLQKLLELKNKT 478
           DRLELSRANKGRGKTGN    AAEDKAA+ERALAEANDRVKDLEKNVDNLQKLLELKNKT
Sbjct: 414 DRLELSRANKGRGKTGNAGAAAAEDKAAAERALAEANDRVKDLEKNVDNLQKLLELKNKT 473

Query: 479 IAEMSAQQQKPADAAKPAVADNGAAKAENQPAEA---ATPTPAPTPAPAAATTPQPVASA 535
           IA++SAQQ++    +  A A   AA AE +PAE    A   PA      A          
Sbjct: 474 IADLSAQQKEAKPESPAAAA--PAANAEVKPAEGATPAADAPAAAAPAPAPAPAPAATPP 531

Query: 536 KPTDKGDKSGGSFLDKVKENPYIVAGAGVLVALLAAGGGVLAMRRRKKKTEDGPTEPTIE 595
                 +KSGGSF+DK+KENPY++AGAGVLVALLA GGGVLAMRRRKKK E    EP +E
Sbjct: 532 MAAKPAEKSGGSFVDKIKENPYVLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVE 591

Query: 596 PEPAPAPAPEPAAAIAEPSPEPVAEAPAAEVAEAEPVAAAAPV-EEAPVDPIAEADMYIA 654
           PEPA  P PEP AA     PEP   A  A  A AEPVA A  V EEAPVDPI EADMYIA
Sbjct: 592 PEPASVPEPEPVAAAVAAEPEPPVSAEPAVEAVAEPVAVAETVAEEAPVDPITEADMYIA 651

Query: 655 YGRDEQAEDILKLALQTQPERQALHSKLLEIYAKRGDVANFNRVALNLHALSGGLNEAWV 714
           YGRDEQAEDILKLALQTQPERQALH+KLLEIYAKR DVA FNRVALNLHALSGGLNE WV
Sbjct: 652 YGRDEQAEDILKLALQTQPERQALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWV 711

Query: 715 KAAALGLELDPTNPLYGGTPAEPEPVVAEEPGMEFDLSDFKGAELQPEPVATAAAAAAPM 774
           KAAALGLE+DPTNPLYGG P        EE GMEFDL DFK AE++    A A  A APM
Sbjct: 712 KAAALGLEIDPTNPLYGGQPEPEPEPEPEEAGMEFDLDDFKSAEIR----ADATPAPAPM 767

Query: 775 DLGKDIDFDLDLENGAKPDASEPILPASSGATSASMLLDSMDDVPAATSLSDLDLSLPEE 834
           DLGKDIDFDLDLENGAKPDA EP+LPAS+ A SAS LLDS+DD P A+SLSDLDLSLP+E
Sbjct: 768 DLGKDIDFDLDLENGAKPDADEPLLPASTAAASASTLLDSLDDQPQASSLSDLDLSLPDE 827

Query: 835 STA-PSATNLLEEDEESAFEQEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQIAR 893
           ++A PSATNLLEEDEESAFE EMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQ+AR
Sbjct: 828 ASAPPSATNLLEEDEESAFEAEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVAR 887

Query: 894 AKQMMAALG 902
           AKQMMA LG
Sbjct: 888 AKQMMAGLG 896


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,830,252
Number of extensions: 61231
Number of successful extensions: 389
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 12
Length of query: 902
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 808
Effective length of database: 1,174,780
Effective search space: 949222240
Effective search space used: 949222240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 135 (56.6 bits)