BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3247.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312585|ref|YP_003776677.1| lipoprotein [Herbaspirillum ser...   414   e-117

>gi|300312585|ref|YP_003776677.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  414 bits (1065), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 263/335 (78%), Positives = 274/335 (81%), Gaps = 10/335 (2%)

Query: 1   MGLFSLFRKNKQDSASDQGTFRSRADEQSSVIRSRNSRSTANGSGRAASGRAKAGKDA-A 59
           MGLFS FRKNKQD+ASDQG FRSR++EQSSVIRSR+SRSTAN SGRA   RAKAGKD  A
Sbjct: 1   MGLFSFFRKNKQDAASDQGAFRSRSEEQSSVIRSRSSRSTANTSGRATGTRAKAGKDGGA 60

Query: 60  DPLLPEKKRARRRLIGAVALALAVVIVLPMILDSEPKPLNEDIAIQIPSKDAPVADMTQP 119
           DPLLPEKKRARRRLIGAVALALAVVIVLPMILDSEPKPLN+DIAIQIPSKD P +   QP
Sbjct: 61  DPLLPEKKRARRRLIGAVALALAVVIVLPMILDSEPKPLNDDIAIQIPSKDQPASGAAQP 120

Query: 120 GRSDPKQASLDQKEEIVEPASIAPEPASPTPTPTPTPTPAPAAAQPETPPVAVTPKVVEK 179
              D KQASLDQKEEIVEPASIA     P  TP P  T   A      P  AV PKV+EK
Sbjct: 121 AAGDAKQASLDQKEEIVEPASIA---PEPATTPAPAATAPAATQPATPPVAAVAPKVIEK 177

Query: 180 PVEKPVEKHQEKSTEKPTEKSAAKTEHKEEPKREEPKKEAAKPKAPA-ATDDDAARALAI 238
           PVEKP EK  +K T K  EK     EH     REEPKKEAAKPKA A +  DD+ARALAI
Sbjct: 178 PVEKPAEKPADKPTPKIEEKKPIVVEH-----REEPKKEAAKPKASAPSAHDDSARALAI 232

Query: 239 LEGKSGAAAAPAEKKPAAAGGKFVIQVAALATQDKVNELRNKLSAAGIHSYTQKIATQAG 298
           LEGKSGAAAAPAEKKPAA+GGKFVIQVAALATQDKVNELRNKLSAAGIHSYTQKIATQAG
Sbjct: 233 LEGKSGAAAAPAEKKPAASGGKFVIQVAALATQDKVNELRNKLSAAGIHSYTQKIATQAG 292

Query: 299 DRTRIRVGPFASREEAERMGGRIKKLGLNATIVPA 333
           DRTRIRVGPF SREEAERMGGRIKKLGLNATIVPA
Sbjct: 293 DRTRIRVGPFGSREEAERMGGRIKKLGLNATIVPA 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.124    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 493,726
Number of extensions: 12480
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 131 (55.1 bits)