BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3246.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312584|ref|YP_003776676.1| colicin V production transmembr...   265   2e-72

>gi|300312584|ref|YP_003776676.1| colicin V production transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  265 bits (677), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/166 (85%), Positives = 153/166 (92%)

Query: 1   VTIFDYLVLLILACSVIIGTLRGFVREVLSLAGWIVALVVANTYGEALSAMLPDVVPGEL 60
           +TIFDYLVLLIL CSVIIGTLRG VREVLSLAGW+VALVVA+TYGEAL+ MLP++VPGEL
Sbjct: 1   MTIFDYLVLLILGCSVIIGTLRGLVREVLSLAGWVVALVVADTYGEALATMLPEMVPGEL 60

Query: 61  TRLIVAFIALFIGTRLLVALVAKTLGELVKATGLGFLDRTLGSVFGVARGVLLVVAVALL 120
           TRLIVAFIALFIGTRLLVALVA+TL ELVKATGL  LDRTLGS FGVARGVLLVV  ALL
Sbjct: 61  TRLIVAFIALFIGTRLLVALVARTLSELVKATGLTLLDRTLGSFFGVARGVLLVVVAALL 120

Query: 121 CGTTEIPRQPFWTQARFSPWVVQAAQAVLPYLPGKLAEHVSFSTPV 166
           CGTT IP+Q FW +ARFSPWV QAA+AVLPYLPGKLAEHVSF+TPV
Sbjct: 121 CGTTAIPQQAFWKEARFSPWVEQAAEAVLPYLPGKLAEHVSFATPV 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 452,921
Number of extensions: 15578
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)