BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3242.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312580|ref|YP_003776672.1| FabD/lysophospholipase-like est...   656   0.0  
gi|300314035|ref|YP_003778127.1| transmembrane patatin-like phos...    86   4e-18

>gi|300312580|ref|YP_003776672.1| FabD/lysophospholipase-like
           esterase [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/338 (94%), Positives = 331/338 (97%)

Query: 1   MSNKIVSLALQGGGSHGAFTWGVLDRLLEDGRLDLEGISGASAGAMNAVVLAQGYVQDGR 60
           MSNKI+SLALQGGGSHGAFTWGVLDRLLEDGRL  EGISGASAGAMNAVVLAQGYVQDGR
Sbjct: 1   MSNKIISLALQGGGSHGAFTWGVLDRLLEDGRLGFEGISGASAGAMNAVVLAQGYVQDGR 60

Query: 61  AGARAALERFWTALSTGAPLDFINAEGAPVIANPAPMPGMQALLAMTRFFSPTQLNPLDI 120
            GARAALERFWTALSTGAPLD+INAEGAPVIANP PMPGMQALLAMTRFFSPTQLNPLDI
Sbjct: 61  EGARAALERFWTALSTGAPLDYINAEGAPVIANPTPMPGMQALLAMTRFFSPTQLNPLDI 120

Query: 121 NPLRDILVEQVDFERLRRQRELKLFIAATQVSTGTLKIFRNADLSVDVLLASACLPSLHR 180
           NPLRDIL+EQVDF+RLRRQRELKLFIAATQVSTGTLKIFRNADLSV+ LLASACLPSLHR
Sbjct: 121 NPLRDILLEQVDFDRLRRQRELKLFIAATQVSTGTLKIFRNADLSVEALLASACLPSLHR 180

Query: 181 PIEIEGEAYWDGGLTANPPIFPLLHSCTARDVMVVLLHPSRRAGTPTTSHDIGQRLSEIS 240
           PIEIEGEAYWDGGLTANPPIFPLLH+C ARDVMVVLLHPSRRAGTPT++HDIGQRLSEIS
Sbjct: 181 PIEIEGEAYWDGGLTANPPIFPLLHACAARDVMVVLLHPSRRAGTPTSTHDIGQRLSEIS 240

Query: 241 FSSAFFTELSALALAKREAESSTLAFGSLERRLRQLNLHMIDANEVMEQLTNLSKLNTQA 300
           FSSAFFTELSALALAKREAE+STLAFGSLERRLRQLN+HMIDANE+MEQLTNLSKLNTQA
Sbjct: 241 FSSAFFTELSALALAKREAENSTLAFGSLERRLRQLNMHMIDANELMEQLTNLSKLNTQA 300

Query: 301 SFIGSLFQQGRERASEWLEQNFAQIGHTSTFDLGRFLP 338
           SFIGSLFQQGRERA+EWLEQNFAQ+GH STFDLGRFLP
Sbjct: 301 SFIGSLFQQGRERAAEWLEQNFAQVGHASTFDLGRFLP 338


>gi|300314035|ref|YP_003778127.1| transmembrane patatin-like
           phospholipase [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 119/260 (45%), Gaps = 32/260 (12%)

Query: 6   VSLALQGGGSHGAFTWGVLDRLLEDGRLDLEGISGASAGAMNAVVLAQGYVQDGRAGARA 65
           V+L LQGGG+ GA+  GV   L E      + + G S GA+NA ++A G  ++ R     
Sbjct: 27  VALVLQGGGALGAYQAGVYQALHEHD-FTPDWVVGTSIGAINAALIA-GNPRETRI---E 81

Query: 66  ALERFWTALSTGAPLDFINAEGAPVIANP--APMPGMQALLAMTR-FFSPTQLNP----L 118
            L  FW    T A  D ++    P    P    +  M   L  T  FF P  LN     L
Sbjct: 82  RLREFW---ETVAHPDLLDLRTVPDTLRPWATRLTTMDTFLRGTPGFFRPRPLNAFALGL 138

Query: 119 DINP----------LRDILVEQVDFERLRRQRELKLFIAATQVSTGTLKIF--RNADLSV 166
            + P          L   L   VDF+ L  Q  +++ ++A +VS GTL  F  R   L  
Sbjct: 139 PVPPEEASFYSTAELEQTLSRLVDFDYLNGQSGIRMTVSAVKVSCGTLVNFDSREQALGP 198

Query: 167 DVLLASACLPSLHRPIEIEGEAYWDGGLTANPPIFPLLHSCTARD---VMVVLLHPSRRA 223
             +LAS  LP    P+ +EGE YWDGGL +N P+  +L+     +   +MV L H     
Sbjct: 199 QHVLASGALPPGFAPVRVEGELYWDGGLYSNTPLEAVLNDTPRTNLVCLMVDLWHAD--G 256

Query: 224 GTPTTSHDIGQRLSEISFSS 243
             P T  ++  R  +++F+S
Sbjct: 257 PEPRTLEEVVTREKDVTFAS 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 992,363
Number of extensions: 39829
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)