BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3236.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase [H...   811   0.0  
gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase [H...   133   2e-32

>gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/399 (97%), Positives = 396/399 (99%)

Query: 1   MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS 60
           MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS
Sbjct: 1   MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS 60

Query: 61  TWEMVIDWLAAGVDPSQATLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKLAD 120
           TWEMVIDWLAAGVDP+Q+TLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKLAD
Sbjct: 61  TWEMVIDWLAAGVDPAQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKLAD 120

Query: 121 RDLATYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFEEK 180
           RDLATYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFEEK
Sbjct: 121 RDLATYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFEEK 180

Query: 181 ALAATKKLGSKRAKLYLELRTQFQEKGDDEALEQAKAMLDDAQNLSMIDRERLFGYLEGS 240
           ALAATKKLGSKRA+LYLELRTQFQEKGDDEALEQAKAMLDDAQNLSMIDRERLFGYLEGS
Sbjct: 181 ALAATKKLGSKRARLYLELRTQFQEKGDDEALEQAKAMLDDAQNLSMIDRERLFGYLEGS 240

Query: 241 RKLILTEPQAMLTEASRLPGLDGAKMSKSYGNAIALREDAATVTKKVKTMPTDPQRVRRS 300
           RKLILTEPQAMLTEASRLPGLDGAKMSKSYGNAIALRED  +VTKKVKTMPTDPQRVRRS
Sbjct: 241 RKLILTEPQAMLTEASRLPGLDGAKMSKSYGNAIALREDKESVTKKVKTMPTDPQRVRRS 300

Query: 301 DPGDPDKCPVWQFHQVYSTPEVKEWAAKGCRSAGIGCLECKQPVIDAILQEQQPMLERAQ 360
           DPGDPDKCPVWQFHQVYS+ EVKEWAAKGCRSAGIGCLECKQPVIDAILQEQQPMLERAQ
Sbjct: 301 DPGDPDKCPVWQFHQVYSSAEVKEWAAKGCRSAGIGCLECKQPVIDAILQEQQPMLERAQ 360

Query: 361 PYLDDPSLVRAIVADGCEKARKLAQDTMRDVREAMGLGY 399
           PYLDDPSLVRAIVADGCEKARKLAQ+TMRDVREAMGLGY
Sbjct: 361 PYLDDPSLVRAIVADGCEKARKLAQETMRDVREAMGLGY 399


>gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 3/185 (1%)

Query: 6   VVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETSTWEMV 65
           V++G RPTG LHLGHY G+LK+ V LQ        +AD  A+T +      +  +  E+ 
Sbjct: 16  VLTGDRPTGPLHLGHYIGSLKSRVALQETSRQFLLLADTQAMTDNVGRHQKVTDNVLEVA 75

Query: 66  IDWLAAGVDPSQATLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQ-QEKLADRDLA 124
           +D+LA G+DP ++T+FIQS+V E  EL ++L     +  LER PT K++ + +  +RD+ 
Sbjct: 76  LDYLAVGIDPEKSTIFIQSQVRELYELSMVLLNLVTVSRLERNPTIKEEIRLRGFERDIP 135

Query: 125 TYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFE-EKALA 183
             GFL YP+ QAAD+  ++   VPVG DQ+P IE   E+ R+FN    +E   E ++ L+
Sbjct: 136 A-GFLTYPVSQAADITAFKGQLVPVGSDQLPMIEQTNELVRKFNATVDREVLVECKEVLS 194

Query: 184 ATKKL 188
            T +L
Sbjct: 195 ETGRL 199



 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 244 ILTEPQAMLTEASRLPGLDG-AKMSKSYGNAIALREDAATVTKKVKTMPTDPQRVRRSDP 302
           +L E + +L+E  RLPG+DG AKMSKS GN+IAL    A + + V  M TDP  +R  DP
Sbjct: 185 VLVECKEVLSETGRLPGIDGKAKMSKSLGNSIALGATPAEIKQAVHRMYTDPNHLRVDDP 244

Query: 303 GDPDKCPVWQFHQVY-----STPEVKEWAAKGCRSAGIGCLECKQPVIDAILQEQ-QPML 356
           G  +   V+ F   +     +  E+K    +G    G+G    K+  ++ ILQE  +P+ 
Sbjct: 245 GQVEGNVVFTFLDAFDPDRDAVAELKAHYTRG----GLGDSVVKRR-LEGILQEMLEPIR 299

Query: 357 ERAQPYLDDPSLVRAIVADGCEKARKLAQDTMRDVREAMGLGY 399
            R + +  D   V AI+  G E+A  +A  TM +V  A+GL Y
Sbjct: 300 TRREEFAKDRGEVLAILKRGTERASAVAAQTMSEVNAALGLNY 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,311,542
Number of extensions: 54585
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)