BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3234.p
         (393 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312572|ref|YP_003776664.1| transmembrane lipoprotein [Herb...   729   0.0  

>gi|300312572|ref|YP_003776664.1| transmembrane lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/393 (92%), Positives = 381/393 (96%)

Query: 1   MTNRNNVRPVSRSAYTLTQRSIVVALALAGLAGCSSIGNMLEGDRIDYKSAEKARGPRLE 60
           MTN  NVRPV RSA TLTQRSIVVALALAGLAGCSS+GN+L+GDRIDYKSAEKARGPRLE
Sbjct: 1   MTNSKNVRPVVRSAATLTQRSIVVALALAGLAGCSSVGNLLDGDRIDYKSAEKARGPRLE 60

Query: 61  VPPDLTQLQRDNRYSIPEANKGVATASGYQLEQQTKPTTDLTSVAPDAQGKDIRIERDGS 120
           VPPDLTQLQRDNRY+IPEANKGVATASGYQLEQQT+P  ++TSVAP A+G +IRIERDGS
Sbjct: 61  VPPDLTQLQRDNRYAIPEANKGVATASGYQLEQQTRPANEITSVAPAAKGDEIRIERDGS 120

Query: 121 QRWLVVKQTPEQLWPQIKDFWQDNGFLINVESPDTGVMETDWAENRAKIPQDFIRNTLGK 180
           QRWLVVKQTPEQLWPQIKDFWQD+GFLIN+ESPDTGVMETDWAENRAKIPQDF+RNTLGK
Sbjct: 121 QRWLVVKQTPEQLWPQIKDFWQDSGFLINIESPDTGVMETDWAENRAKIPQDFVRNTLGK 180

Query: 181 VFDSLYSTGERDKFRTRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEA 240
           VFDSLYSTGERDKFRTRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEA
Sbjct: 181 VFDSLYSTGERDKFRTRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEA 240

Query: 241 EFLSRLMVRLGADATKAKAAVANAPSLQARSRLVKTATGTSVQVDEGFDRAWRRIGLALD 300
           EFLSRLMVRLGA+ TKAKAAVANAPSLQARSRL KTA GTSVQVDEGF+RAWRR+GLALD
Sbjct: 241 EFLSRLMVRLGAEETKAKAAVANAPSLQARSRLQKTAAGTSVQVDEGFERAWRRVGLALD 300

Query: 301 RVGFTVEDRDRSQGIYYVRYVDQDQDAKDKKDSGFFSRIFSSKDKDKKAAKYRIVVKGAG 360
           RVGFTVEDRDRSQGIYYVRYVDQ+QDAKDKKD GFFSRIFSSKDKDKKAAKYRIVVKGAG
Sbjct: 301 RVGFTVEDRDRSQGIYYVRYVDQNQDAKDKKDEGFFSRIFSSKDKDKKAAKYRIVVKGAG 360

Query: 361 SDSSNIVVQNGEGGPDTSGISDKILGLLNDQLK 393
           SDSSNIVVQNGEGGPDTSGISDKILGLLN+QLK
Sbjct: 361 SDSSNIVVQNGEGGPDTSGISDKILGLLNEQLK 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,093,137
Number of extensions: 40533
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,207,925
Effective search space: 369625050
Effective search space used: 369625050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)