BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3222.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312561|ref|YP_003776653.1| xanthine/CO dehydrogenase matur...   543   e-155

>gi|300312561|ref|YP_003776653.1| xanthine/CO dehydrogenase
           maturation protein [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  543 bits (1398), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/362 (75%), Positives = 298/362 (82%)

Query: 1   MTTWLSALRRMQQEAIPAVLVTVAQIQGSTPREPGARMVYSADQQFDTIGGGHLEWRAAQ 60
           MTTWL+ALRRMQ++A PAVLVTVAQIQGSTPR PGARM+Y+AD QFDTIGGGHLEWRAAQ
Sbjct: 1   MTTWLAALRRMQRDATPAVLVTVAQIQGSTPRAPGARMLYTADTQFDTIGGGHLEWRAAQ 60

Query: 61  IARAMLDTDAASLPGQRRLERIALGPSLGQCCGGVVVLCFERIGADEEALRTWQVLEQSW 120
           +ARAML      L GQRRLERIALGPSLGQCCGGVV LCFERI  D+EA+RTWQ LEQSW
Sbjct: 61  MARAMLQAPLGQLAGQRRLERIALGPSLGQCCGGVVFLCFERIATDDEAMRTWQALEQSW 120

Query: 121 CRGNDLWRAVPLDQIHAQQLHAIDGRNCQPDVPDHGLPPMDLRDVRQTHLLRDRHGHRWL 180
             G DLWRAVPLD   AQ L   +  +  PD   HGLPP  L   RQT LLRD  G RWL
Sbjct: 121 SSGQDLWRAVPLDHAGAQLLIEGNIEDLPPDAYAHGLPPDTLGQQRQTRLLRDAQGRRWL 180

Query: 181 LDLCRAHQPQVVLFGAGHVGAAIVKVLSTLPCRVLWVDEREDMFPPDLPAQIRIEATDVP 240
           LD C A +PQVVL GAGHVG AIV VLSTLPCRVLWVD RE+MFPP LP QIR EATDVP
Sbjct: 181 LDWCHASRPQVVLCGAGHVGQAIVAVLSTLPCRVLWVDAREEMFPPGLPPQIRTEATDVP 240

Query: 241 NAAVDMAEPGAYYLVMTHSHALDQQLTERILKRQDIAWFGLIGSITKRKQFEHRLAVRGF 300
           NAAVDMA+PGAY+LVMTHSHALDQQL+ERILKRQD+AWFGLIGS+TKR+QFEHRLA RGF
Sbjct: 241 NAAVDMADPGAYFLVMTHSHALDQQLSERILKRQDVAWFGLIGSLTKRRQFEHRLAERGF 300

Query: 301 GAAELERITCPIGIPGIYGKEPASIAIAVVAQLMQLWELRLSHPPSKALSLPMATHALDG 360
            AA+LERITCPIGI GI GKEPASIAIAVVAQL+QLWE R + P  +     +ATHALDG
Sbjct: 301 SAAQLERITCPIGIDGIDGKEPASIAIAVVAQLLQLWEKRQAAPELQPSPAVLATHALDG 360

Query: 361 RG 362
           RG
Sbjct: 361 RG 362


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,309,117
Number of extensions: 58763
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)