BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3221.p
         (789 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit ...  1433   0.0  

>gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit B
           [Herbaspirillum seropedicae SmR1]
          Length = 789

 Score = 1433 bits (3710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 704/787 (89%), Positives = 742/787 (94%)

Query: 1   MNKQSEQFLHTLVPPPADWATVGKPHPHESARLHVTGEATYTDDIVELQGTLHAALGLSQ 60
           MN+ +E FL  L  PP DWA VGKPHPHESARLHVTGEA YTDDI EL+GTLHAALGLSQ
Sbjct: 1   MNQHTEAFLAPLAQPPHDWAAVGKPHPHESARLHVTGEAVYTDDIPELRGTLHAALGLSQ 60

Query: 61  KAHARLRAIDLDKVKTAPGVVAVLTAQDIPGDNQCGAIIHDDPVLADELVQYVGQPIFIV 120
           KAHAR+RAIDL+KVK APGV AV TA DIPGDN+CGAI+HDDPVLAD LVQYVGQP+FIV
Sbjct: 61  KAHARVRAIDLEKVKAAPGVKAVFTAADIPGDNECGAILHDDPVLADGLVQYVGQPLFIV 120

Query: 121 VADSHDRARRAARLAVIDYEELPPILTPRAAHAAQSYVLPPMHLSRGEPAVALALAPHKL 180
           VADSH+ ARRAARLAVIDYEELP ILTPR AHAAQSYVLPPMHLSRGEPA+ALALAPH+L
Sbjct: 121 VADSHELARRAARLAVIDYEELPAILTPRQAHAAQSYVLPPMHLSRGEPAIALALAPHRL 180

Query: 181 RGQFDVGGQEQFYLEGQISYAIPKEGRSMHVYCSTQHPSEMQHHIATVLQLAAHDVLVEC 240
           RGQFDVGGQEQFYLEGQISYAIPKEGR MHVYCSTQHPSEMQHH+ATVL LA+HDVLVEC
Sbjct: 181 RGQFDVGGQEQFYLEGQISYAIPKEGRGMHVYCSTQHPSEMQHHVATVLGLASHDVLVEC 240

Query: 241 RRMGGGFGGKESQSALWACAAAVAAAHLRRPVKLRADRDDDMMVTGKRHCFAYDYEIGYD 300
           RRMGGGFGGKESQSALWACAAAVAAA L+RPVKLRADRDDDMMVTGKRHCFAYDYEIGYD
Sbjct: 241 RRMGGGFGGKESQSALWACAAAVAAARLQRPVKLRADRDDDMMVTGKRHCFAYDYEIGYD 300

Query: 301 DDGRIVAAKIDMISRAGFSADLSGPVATRAVCHFDNAYYLSDVEIHAMCGKTHTQSNTAF 360
           D GRIVAAKI+MISRAGFSADLSGPVATRAVCHFDNAYYLSDV+I AMCGKT+TQSNTAF
Sbjct: 301 DHGRIVAAKIEMISRAGFSADLSGPVATRAVCHFDNAYYLSDVDIRAMCGKTNTQSNTAF 360

Query: 361 RGFGGPQGALAIEYIIDEIARNLGRDPLEIRRNNFYGPSEEEGPLARNVTHYGQKVEDNV 420
           RGFGGPQGALAIEYIID+IAR+LGRDPLEIRRNNFYGPS+EEGP ARNVTHYGQKVEDN+
Sbjct: 361 RGFGGPQGALAIEYIIDDIARHLGRDPLEIRRNNFYGPSDEEGPQARNVTHYGQKVEDNI 420

Query: 421 IHGLVDQLEQSSRYQERRGEIARFNAANTVLKKGLALTPVKFGISFNVPHLNQAGALVHV 480
           I  LVDQLE+SSRYQERR  +A FNA +TVLKKGLALTPVKFGISFNVPHLNQAGALVHV
Sbjct: 421 IPALVDQLERSSRYQERRQAVAAFNAGSTVLKKGLALTPVKFGISFNVPHLNQAGALVHV 480

Query: 481 YTDGSVLVNHGGTEMGQGLNTKVAQVVAHALGVPLEKVRCSATDTSKVANTSATAASTGS 540
           YTDGSVLVNHGGTEMGQGLNTKVAQVVAH LGVPLE+VRCSATDTSKVANTSATAASTGS
Sbjct: 481 YTDGSVLVNHGGTEMGQGLNTKVAQVVAHTLGVPLERVRCSATDTSKVANTSATAASTGS 540

Query: 541 DLNGKAAQDAALQIRARLAEVAARHFKVESSALRFADGLVIAGEQSLPFVELVMQAYLQR 600
           DLNGKAAQDAALQ+R RLA+VAA    VE +A+RFADG V+AG QS+ F ELVM+AYLQR
Sbjct: 541 DLNGKAAQDAALQVRTRLAQVAATLLGVEPTAVRFADGRVMAGAQSMAFAELVMKAYLQR 600

Query: 601 VQLWSDGFYSTPKVHWDAKRMYGHPFFYYAYAAAVSEVVIDTLTGEWKLLQADLLYDAGE 660
           VQLWSDGFYSTPKVHWDAKRM+GHPFFY+AYAAAVSEVVIDTLTGEWKLLQADLLYDAG+
Sbjct: 601 VQLWSDGFYSTPKVHWDAKRMHGHPFFYFAYAAAVSEVVIDTLTGEWKLLQADLLYDAGQ 660

Query: 661 SLNPALDIGQVEGGFIQGMGWLTTEELWWSQDGKLMTHAPSTYKIPAISDCPAALRTELY 720
           SLNPALDIGQVEGGFIQGMGWLTTEELWW++DGKLMTHAPSTYKIPAISDCPA LRTEL+
Sbjct: 661 SLNPALDIGQVEGGFIQGMGWLTTEELWWNKDGKLMTHAPSTYKIPAISDCPARLRTELF 720

Query: 721 ANSNVSDTIHRSKAVGEPPLLLPFSVFLAIRDAVSAVGQHRVNPPLRAPATSEAILDAVD 780
            N NVSDTIHRSKAVGEPPLLLPFSVFLAIRDAVSAVG HRVNPPLRAPATSEAILDAVD
Sbjct: 721 QNRNVSDTIHRSKAVGEPPLLLPFSVFLAIRDAVSAVGGHRVNPPLRAPATSEAILDAVD 780

Query: 781 AVRAATA 787
           AVRAATA
Sbjct: 781 AVRAATA 787


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,491,959
Number of extensions: 106591
Number of successful extensions: 346
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 1
Length of query: 789
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 696
Effective length of database: 1,179,515
Effective search space: 820942440
Effective search space used: 820942440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)