BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3220.p
         (494 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...   879   0.0  
gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...    93   6e-20

>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/494 (87%), Positives = 464/494 (93%)

Query: 1   MPETQRPIQFYFRGQTHEVAGQPTTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGEL 60
           M ET   IQFYFRGQTH VAG   TRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGEL
Sbjct: 1   MSETHSSIQFYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGEL 60

Query: 61  RHDQLELKTVNSCIQFLPTLDGRALFTVEDLKQADGCLHPVQQAMVECHGSQCGFCTPGF 120
           + +QL LKTVN+CIQFLPTLDGRALFTVEDLKQADG LHPVQQAMVECHGSQCGFCTPGF
Sbjct: 61  QGEQLALKTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGF 120

Query: 121 VMSLWGLYLKHDKDGITPSKREIDDALSGNLCRCTGYRPIIDAARRMGELPKVEFDREAV 180
           VMSLWGLYL+H++DG+TPSKREIDDALSGNLCRCTGYRPIIDAARRMGELPKVEFDREA+
Sbjct: 121 VMSLWGLYLRHEQDGVTPSKREIDDALSGNLCRCTGYRPIIDAARRMGELPKVEFDREAI 180

Query: 181 KQALREIDHDAPLAVSHAGQTFHAPRTLQQLAQLRAALPQARILAGSTDVGLWVTKQMRE 240
           K ALR ID   PLA++HAGQTFHAPRTL QLAQLRA LPQARILAGSTDVGLWVTKQMRE
Sbjct: 181 KAALRSIDQQQPLALTHAGQTFHAPRTLAQLAQLRADLPQARILAGSTDVGLWVTKQMRE 240

Query: 241 LGNIIYIGRVEELRTISVHGEMLEIGAGVSLEEAYAEAARHYPEELSELWQRFASLPVRH 300
           LG+++YIGRVEELR + V  EMLEIGAGV LEEAYAEAARHYPEELSELWQRFASLPVR+
Sbjct: 241 LGDLLYIGRVEELRAMQVRDEMLEIGAGVCLEEAYAEAARHYPEELSELWQRFASLPVRN 300

Query: 301 AGTLGGNVANGSPIGDSMPWLIALGAQILLYSVRGQRVMALEDFYLAYQKSALQADEVVQ 360
           AGTLGGN+ANGSPIGDSMPWLIALGAQI+LYSVRGQRVM LEDFYLAYQKSALQADE+VQ
Sbjct: 301 AGTLGGNLANGSPIGDSMPWLIALGAQIVLYSVRGQRVMPLEDFYLAYQKSALQADELVQ 360

Query: 361 AVRIPLPHKDVRFRVYKLSKRFDQDISAVCAAFALRMEGDTISEARIAFGGMAATPKRAA 420
           AVRIPLP K++RFRVYKLSKRFDQDISAVCAAFAL+M+GDTI +ARIA+GGMAATPKRAA
Sbjct: 361 AVRIPLPRKELRFRVYKLSKRFDQDISAVCAAFALQMQGDTIVQARIAYGGMAATPKRAA 420

Query: 421 QAEALLQGGAWSESQVRAAMAALAQDYAPLSDMRASASYRLRSAQNLLYRYWLETRTEAP 480
           QAEA+LQGG WSE+Q +AAMAALAQDYAPLSDMRASA+YRLR+AQNLLYRYWLETR++AP
Sbjct: 421 QAEAVLQGGPWSEAQAQAAMAALAQDYAPLSDMRASAAYRLRTAQNLLYRYWLETRSDAP 480

Query: 481 LTRQDVRAFAVDAA 494
           L RQ++RA AVDAA
Sbjct: 481 LARQELRACAVDAA 494


>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score = 92.8 bits (229), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 18/170 (10%)

Query: 5   QRPIQFYFRGQ--THEVAGQPTTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELRH 62
           Q PI F+  G   + ++A       +L  LR DL   G K GC  G+CGACTV+V  +  
Sbjct: 4   QEPITFHVNGVPVSLDIAADAP---LLNVLRNDLCLNGPKFGCGLGECGACTVLVDGV-- 58

Query: 63  DQLELKTVNSCIQFLPTLDGRALFTVEDLKQADGCLHPVQQAMVECHGSQCGFCTPGFVM 122
                    SC+  L  +  R + T++ L+Q DG L PVQQA ++  G+QCG+C  G +M
Sbjct: 59  ------AARSCVIPLAGVAARHVTTLDGLEQ-DGRLDPVQQAFIDEQGAQCGYCLNGMIM 111

Query: 123 SLWGLYLKHDKDGITPSKREIDDALSGNLCRCTGYRPIIDAARRMGELPK 172
           ++  L L+      TPS+ EI   L  NLCRC  +  I+ AA R  EL +
Sbjct: 112 TIKALLLRSP----TPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,438,424
Number of extensions: 56382
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 494
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,198,455
Effective search space: 485374275
Effective search space used: 485374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)