BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3219.p
         (433 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312558|ref|YP_003776650.1| transmembrane protein [Herbaspi...   803   0.0  

>gi|300312558|ref|YP_003776650.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/431 (94%), Positives = 419/431 (97%)

Query: 1   MNVLNKFFHLEENGTTVRTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATCVAA 60
           MN LNKFF L+ENGTT+RTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATC+AA
Sbjct: 1   MNALNKFFRLDENGTTIRTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATCIAA 60

Query: 61  AVGTLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFLVVSVLR 120
           AVGTLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFL+VSVLR
Sbjct: 61  AVGTLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFLLVSVLR 120

Query: 121 IREVIIKSIPHSLRTAIPAGIGLFLAIISLKSAGIVAANPATFVTLGDLHQPAPVMASIG 180
           +RE+II SIP SLRTAIPAGIGLFL IISLKSAGI+AANPATFVTLGDLHQP  VMA IG
Sbjct: 121 VRELIISSIPRSLRTAIPAGIGLFLGIISLKSAGIIAANPATFVTLGDLHQPPAVMAIIG 180

Query: 181 FLVIVALDRLKVRGALLIGILLVTVLSFLFGGNHFSGIFAAPPSIAPTFLQLDIKGAISM 240
           FLVIVALDRLKVRGALLIGILLVTVLSF+FGGNHFSGIFAAPPSIAPT LQLDIKGA+SM
Sbjct: 181 FLVIVALDRLKVRGALLIGILLVTVLSFVFGGNHFSGIFAAPPSIAPTLLQLDIKGALSM 240

Query: 241 GLINVVLVFFLVELFDATGTLMGVATRAGLMKDGKMERLNKALMADSTAIVAGSLLGTSS 300
           GL+NVVLVFFLVELFDATGTLMGVATRAGLMK+GKMERLNKALMADSTAIVAGSLLGTSS
Sbjct: 241 GLLNVVLVFFLVELFDATGTLMGVATRAGLMKEGKMERLNKALMADSTAIVAGSLLGTSS 300

Query: 301 TTAYIESAAGVQAGGRTGLTAVAIAVLFLLCLFIAPLAGVVPAYATAPALFFVACLMLRE 360
           TTAYIESAAGVQAGGRTGLTAVAIAVLFLLCLFIAPLAGVVPAYATAPALFFVACLMLRE
Sbjct: 301 TTAYIESAAGVQAGGRTGLTAVAIAVLFLLCLFIAPLAGVVPAYATAPALFFVACLMLRE 360

Query: 361 LVHIDWNDTTECVPAVITALVMPFTYSIANGLALGFISYAGLKLLTGRMKDVSVVIWIIA 420
           LVHIDW DTTECVPAVITALVMPFTYSIANGLALGFISYA LKLLTGR KDVSVVIW+IA
Sbjct: 361 LVHIDWEDTTECVPAVITALVMPFTYSIANGLALGFISYAALKLLTGRAKDVSVVIWVIA 420

Query: 421 AIFLFKLIYLG 431
           AIFLFKLIYLG
Sbjct: 421 AIFLFKLIYLG 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,284,792
Number of extensions: 54469
Number of successful extensions: 274
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,203,190
Effective search space: 415100550
Effective search space used: 415100550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)