BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3215.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452...    79   4e-16
gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136...    72   3e-14
gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577...    68   5e-13

>gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score = 78.6 bits (192), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 14/117 (11%)

Query: 114 DCERYNYTEKLHGGVKEIAGATYHISICGAGVSGSHFFGEGTERVRLTITDEQGGILARR 173
           DCE   YT+KL+GGV++  G ++ + +CGAG   S    +  +RVRL I DE G + A R
Sbjct: 123 DCE--TYTQKLNGGVRQYRGLSFRVELCGAGPRES----DRLDRVRLRIYDESGDLRAVR 176

Query: 174 YYKI-FLDDSSGLQSLSINKNRILYFDADSKQED----ISIPPSIHDWIGARIPILN 225
           Y+ + +  D   L  L  +++ + YFDA   +ED    I++PP++ DW+  RIP+L+
Sbjct: 177 YFGVQWGRDFPAL--LEYSRDHLSYFDA-GDEEDFARVIAMPPTLADWVQTRIPLLD 230


>gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 72.4 bits (176), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 9/122 (7%)

Query: 107 FNFFHQTDCERYNYTEKLHGGVKEIAGATYHISICGAGVSGSHFFGEGT-ERVRLTITDE 165
           F   H   C+ YN  + L GGVK + G +Y   +CG G +      +GT +++ L + ++
Sbjct: 80  FTRPHYGRCDFYNRPDTLDGGVKLLNGTSYRFQMCGTGGNDQ----DGTDDKIELKVFND 135

Query: 166 QGGILARRYYKIFLDDSSGL-QSLSINKNRILYFDADSKQE---DISIPPSIHDWIGARI 221
           QG +LARRY+ +      G  Q L+   + + Y D     E    +SIPP+  DWI AR+
Sbjct: 136 QGTLLARRYFSVNWYAGKGFHQPLTYENDSVRYIDVTENSEYEKRLSIPPTKWDWIRARL 195

Query: 222 PI 223
           P+
Sbjct: 196 PL 197


>gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 68.2 bits (165), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 12/111 (10%)

Query: 115 CERYNYTEKLHGGVKEIAGATYHISICGAGVSGSHFFGEGTERVRLTITDEQGGILARRY 174
           CE  ++T+ L+GG K   GA Y I +CGA +        GT ++RL +    G +LA RY
Sbjct: 21  CE--SFTKDLNGGEKIFHGAMYDIKLCGADIK------NGT-KIRLQVFGRSGDLLAERY 71

Query: 175 YKIFLDDSSGLQSLSINKNRILYFDA--DSKQEDISIPPSIHDWIGARIPI 223
           +  +++ S+  + L+   + I+YFD+  +S  + ISIPP+  DWI AR+P+
Sbjct: 72  FSYYVN-SATERDLTEGVDSIIYFDSARESPMQSISIPPTKWDWIRARLPL 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,594
Number of extensions: 22390
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)