BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3212.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313544|ref|YP_003777636.1| transmembrane protein [Herbaspi...   430   e-122

>gi|300313544|ref|YP_003777636.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/415 (52%), Positives = 294/415 (70%), Gaps = 15/415 (3%)

Query: 7   AYGLEWANLLVRWLHLITGIAWIGASFYFVWLDNSIRPPKPGSDLEKKGVSGELWAVHGG 66
           AY L+W NLL+RWLH+IT IAWIG+SFYFVWLDNS+  P    +L++KGV GELWAVHGG
Sbjct: 3   AYILDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLVAPT-DPELKEKGVGGELWAVHGG 61

Query: 67  GFYHPQKYLVAPAELPAELHWFKWEAYATWMSGIAMLLIVYYFNASAMMVDKSVADLSGL 126
           GFY+PQKYL+AP  LP  LHWF WE+Y+TW+SG A+  ++Y FNA+  +VD++V D+S  
Sbjct: 62  GFYNPQKYLLAPKVLPEHLHWFYWESYSTWLSGFALFSLLYLFNANVFLVDRNVFDMSAS 121

Query: 127 QAVGVGIATLVLGWIVYDLLCRSPLGKREG---LLGLVMFVFIVAVAYLLTHLLSGRAAY 183
            A G  IA L+  W++YD +C S +G R G   L+ L++ + +V   +   HL SGRAA+
Sbjct: 122 MAGGAAIAFLIFNWLIYDAIC-STIGDRPGADRLVNLLVGLQVVVSVWAACHLFSGRAAF 180

Query: 184 IHVGAMIGTIMVGNVLMVIIPGQRKLVAAMQAGRAPDPIHGQRGKQRSVHNNYFTLPILF 243
           +  GA + TIM  NVL+ IIPGQRK+VA+M+AG+APDPIHG+RGKQRSVHN YFTLP+LF
Sbjct: 181 LISGASLATIMSANVLVWIIPGQRKMVASMRAGQAPDPIHGKRGKQRSVHNTYFTLPVLF 240

Query: 244 IMISNHYAMTYTHAYSWLVLAAIMAAGVLIRHFFNLRHKGRIAVAYPLAGVALLLVVAIA 303
            M+SNHY+MTY   ++W+VL  IMAAG LIR FF LRHKG     YP  G+A+ L++A+ 
Sbjct: 241 AMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQFFVLRHKGVYNWWYP--GIAVGLLLAVI 298

Query: 304 IAPRPVVPTAPVAQGAGGAASVASVPAAAPDFARIQSIITQRCATCHSDKPTQ---PGFA 360
           +   P++   PV   A  ++S +S  +    FA++Q +I  RC  CH+ +PT    PG  
Sbjct: 299 VWMSPLMQARPVVVAASSSSSSSSSSSEGGAFAQVQQVIQARCIQCHAAQPTLMPVPG-- 356

Query: 361 TAPAGMMLQTPELIHQHAAKIFQRAVQTRDMPLANLTRMTDEERAELAAWFQAGA 415
               G++L +PE I QHA +I+Q+AV  + MPL N+T +T+EERA +  WF+AGA
Sbjct: 357 ---KGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHITEEERAVIGKWFEAGA 408


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,281,581
Number of extensions: 54384
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)