BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3204.p (443 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill... 593 e-171 gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 348 4e-97 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 61 2e-10 >gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 439 Score = 593 bits (1530), Expect = e-171, Method: Compositional matrix adjust. Identities = 307/435 (70%), Positives = 360/435 (82%) Query: 1 MPSSALREIVEESFSEAFTHHVAGRLDQAEEHYRVALDLDERHGPSQHYLGILLHQQGQH 60 + +S L +I+EE F+ AF HH AGRL++AEE YRV L ++E H P+QHYLG+LLHQ+G+H Sbjct: 4 LQASPLAQIIEEQFAAAFAHHAAGRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRH 63 Query: 61 EAALALMHQASQSRPANADWCNDLGNVLFACQQFEQAVQAYEQALVLRPEDAQLWTNLGA 120 E + LM QA+ + PA+ADWCND+GNVLFAC +F++A QAY+QAL LRP+DAQLWTNLGA Sbjct: 64 EEGVTLMRQAALAAPADADWCNDIGNVLFACSRFDEAAQAYQQALALRPDDAQLWTNLGA 123 Query: 121 ARRAQGQADAAIAACQRALALTPQYLPALQQLAELYAQQGHTMLSSRYQCMAYVLPPHEG 180 RRAQGQ AAIAAC++ALA P L AL QLAE++A G M SSRYQCMA+VLPPHEG Sbjct: 124 TRRAQGQHQAAIAACEQALATAPHSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEG 183 Query: 181 KSRELLATCCYFLGRIDEAAEICRQWLLEEPGHPIASHMHAAYAGLPRQTVPRDYIVRRF 240 KSRELLA YFLGR+ EAAE+CR+WL EEPGHPIA+HMHAAYAGLP TVPRDYIVRRF Sbjct: 184 KSRELLAISFYFLGRVAEAAEVCRRWLQEEPGHPIANHMHAAYAGLPSHTVPRDYIVRRF 243 Query: 241 DDYADHFDSKLLAQLDYRGPQVLAQVLQGCLPGLSGLDVLDAGCGTGLCAAVLAPYARQL 300 DDYADHFDS L+ LDYRGPQVL VLQ LP + + VLDAGCGTGLCA VLAPYA L Sbjct: 244 DDYADHFDSNLVTHLDYRGPQVLNAVLQASLPANADMRVLDAGCGTGLCAPVLAPYALSL 303 Query: 301 EGIDLSPNMLRHAARHSHYSTLAQAEVVEWMVAHPAHYDLVAACDVLIYCGQLVDFFEAL 360 EG+DLS NMLRHAA+H YSTLAQA+VVEWM AHP+ Y L+AACDVLIYCGQL FF A Sbjct: 304 EGVDLSSNMLRHAAQHGRYSTLAQADVVEWMTAHPSRYALIAACDVLIYCGQLASFFTAA 363 Query: 361 RTTLRRGGHVIFTVELADADQQASYTLHASGRFRHQRSYVEKCLSAAGLQVVLMRKDSLR 420 + L+ GGH++FTVELA A++ SY LHASGRFRHQR+Y+E CL AAG+QVV++R++SLR Sbjct: 364 QLALQEGGHLVFTVELAGAERPDSYYLHASGRFRHQRAYIEDCLHAAGMQVVMLREESLR 423 Query: 421 VEMQQAVPGLVVLAR 435 VEMQQAVPGLVVLAR Sbjct: 424 VEMQQAVPGLVVLAR 438 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 348 bits (894), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 201/431 (46%), Positives = 254/431 (58%), Gaps = 5/431 (1%) Query: 11 EESFSEAFTHHVAGRLDQAEEHYRVALDLDERHGPSQHYLGILLHQQGQHEAALALMHQA 70 E +A H+AGRLDQA Y L+ D H + HY GI LHQ GQH+ AL + A Sbjct: 19 EALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELA 78 Query: 71 SQSRPANADWCNDLGNVLFACQQFEQAVQAYEQALVLRPEDAQLWTNLGAARRAQGQADA 130 S P NADW ND GNVLFA QQ A QAY AL LRP+D +W NLGA Q + Sbjct: 79 SALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPD 138 Query: 131 AIAACQRALALTPQYLPALQQLAELYAQQGHTMLSSRYQCMAYVLPPHEGKSRELLATCC 190 AI+A +RAL + P +LP+L L ++ G M +S YQC AYVLPP EGKS E+L Sbjct: 139 AISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISF 198 Query: 191 YFLGRIDEAAEICRQWLLEEPGHPIASHMHAA--YAGLPRQTVPRDYIVRRFDDYADHFD 248 YFLGR+ EAAE R WL EEP +PIA+HM AA A +P + R YI FD YA+ F+ Sbjct: 199 YFLGRLPEAAEAYRAWLREEPDNPIAAHMLAACSQADVPPRASDR-YIESHFDRYAETFE 257 Query: 249 SKLLAQLDYRGPQVLAQVLQGCLPGLSGLDVLDAGCGTGLCAAVLAPYARQLEGIDLSPN 308 + LL L YRGP+++A+ L P +D GCGTGLC +APY+ L G+DL+ Sbjct: 258 ANLLQSLGYRGPRLIAEGLALIAPPAHQFAAIDIGCGTGLCGGQVAPYSHHLVGVDLAGK 317 Query: 309 MLRHAARHSHYSTLAQAEVVEWMVAHPAHYDLVAACDVLIYCGQLVDFFEALRTTLRRGG 368 ML AA HY+ L +AE+ ++ HP DLV A D +IY G L +A+ LR GG Sbjct: 318 MLEKAAATGHYARLEKAEIGHYLATHPQSCDLVTAADTMIYFGDLAPVMQAVALALRSGG 377 Query: 369 HVIFTVE-LADAD-QQASYTLHASGRFRHQRSYVEKCLSAAGLQVVLMRKDSLRVEMQQA 426 H +FTVE L AD + LHASGR+RH R YV L A G ++ LR E++Q Sbjct: 378 HFVFTVEALTGADVAPQGHALHASGRYRHGRDYVRGLLQAHGFTLLHDSDQILREEVRQP 437 Query: 427 VPGLVVLARAA 437 V G++ +AR A Sbjct: 438 VAGMLFVARRA 448 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 64/126 (50%) Query: 24 GRLDQAEEHYRVALDLDERHGPSQHYLGILLHQQGQHEAALALMHQASQSRPANADWCND 83 GR D+A Y + L ++ + G L + G++ ALA + +A+ P NAD Sbjct: 90 GRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNREALADLERATALAPDNADAWFQ 149 Query: 84 LGNVLFACQQFEQAVQAYEQALVLRPEDAQLWTNLGAARRAQGQADAAIAACQRALALTP 143 GNVL + A ++YE+A+ LRP+ + W NLG + Q D A+ A RAL + P Sbjct: 150 RGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQP 209 Query: 144 QYLPAL 149 + A+ Sbjct: 210 DFFEAI 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,311,133 Number of extensions: 54778 Number of successful extensions: 228 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 5 Length of query: 443 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 355 Effective length of database: 1,203,190 Effective search space: 427132450 Effective search space used: 427132450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)