BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3196.p (606 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 917 0.0 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 537 e-154 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 473 e-134 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 414 e-116 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 397 e-111 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/615 (83%), Positives = 539/615 (87%), Gaps = 15/615 (2%) Query: 1 MGQLSFSKKLWLPLGLSLIALLATSIFSAFMVRDVRLQERKTDLTNIGQTALSLVKAYGT 60 MGQLSF+KKLWLPL LSLIALLA SIFSA MVR++RL+ERK DLTNIGQTALSLVK YG Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 61 LAESGALSKEEAQQRAKAAIKSLRYGTDGYFSISTSQQIIVMHPIKTELDGKDLTNFKDP 120 LA+SGALSKE+AQ+ AK AIKSLRYGTDGYFSISTS QIIVMHPIKTELDGKDL+NFKDP Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 121 AGTNLFVEISKAGSKPGGSFVSYLWPKVGAAEPVPKTSFVIAYQPWDWNLTTGAYMDDIN 180 AG NLFVEI+KAGSKP G FV YLWPKVGAAEPVPKTSFVIAY+PWDWNLTTGAYMDDIN Sbjct: 121 AGNNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 Query: 181 AAFMGTLTRMAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNID 240 AAF+ TL +MA+LFA V+AALVALVIVIN GILRTIGGDPA+AAEVANRIAQGDLTPNI+ Sbjct: 181 AAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 Query: 241 TQPGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLE 300 T PGD SSLLYAVR MRDSLLSTI NIK+SA TIASAS EIA GNLDLSGRTEQQAGS+E Sbjct: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIAD 360 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVV QVVQTMEGIT+SSRKIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 Query: 421 SVAKVDSGSKLVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SVAKVD+GSKLVEQAG TMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG Sbjct: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFQIDGSQAHAVQAAPTAAVKSAASKPAAR 540 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRF +DGSQA AP AA KPA R Sbjct: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAA------KPATR 534 Query: 541 PT--TTAAPSPAQRKPVAAHPAIAAPKAAAPKAAAAPTAKAEAPATKAA-------GKSA 591 P TT +PA RKP A PA A A+ A A A A KA GKS Sbjct: 535 PVQPTTPPATPALRKPAAPQPARPALAASKAAAPKAAPKTAAAQPAKAEAPAAKPTGKSP 594 Query: 592 SRLPAGEDEGDWETF 606 SRLPAGEDEGDWETF Sbjct: 595 SRLPAGEDEGDWETF 609 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 537 bits (1384), Expect = e-154, Method: Compositional matrix adjust. Identities = 299/527 (56%), Positives = 379/527 (71%), Gaps = 2/527 (0%) Query: 1 MGQLSFSKKLWLPLGLSLIALLATSIFSAFMVRDVRLQERKTDLTNIGQTALSLVKAYGT 60 M LS KKLWLPL S +ALL S++ A+ RD+++ ER+ L ++ + A + + Y Sbjct: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 Query: 61 LAESGALSKEEAQQRAKAAIKSLRYGTDGYFSISTSQQIIVMHPIKTELDGKDLTNFKDP 120 L G LS+E+AQ+ A A I+ RY DGY ++ + +IVMHPI ++LDG+++ +FKD Sbjct: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 Query: 121 AGTNLFVEISKAGSKPGGS-FVSYLWPKVGAAEPVPKTSFVIAYQPWDWNLTTGAYMDDI 179 G L+ I+ GS G ++ Y WP+ G+ +P PK FV ++PW+W+L Y DDI Sbjct: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 Query: 180 NAAFMGTLTRMAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNI 239 A F L + ++ + L + +++R I R+IGG+P +AAE+A +IA GDLT I Sbjct: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 Query: 240 DTQPGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSL 299 T GD+ SL+ AV RD L+ T+ IK + +I ++ EIA GN+DLS RTEQQAGSL Sbjct: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 Query: 300 EETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIA 359 EETAS MEELTATVKQNA NA+ ANQLA A++VAIQGG VVGQVVQTME I SSRKI Sbjct: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 Query: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLID 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 Query: 420 DSVAKVDSGSKLVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDE 479 DSV KVD+G+ LV++AG TM EVV+S++ V+ +V EI++AS EQS+GI +VG AITQMDE Sbjct: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 Query: 480 GTQQNAALVEQAAAAAQSLQDQAATLAGLVGRFQID-GSQAHAVQAA 525 TQQNAALVEQAAAAAQSLQDQA L LVG F ++ G A AV +A Sbjct: 481 TTQQNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGRTAPAVTSA 527 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust. Identities = 307/606 (50%), Positives = 385/606 (63%), Gaps = 9/606 (1%) Query: 5 SFSKKLWLPLGLSLIALLATSIFSAFMVRDVRLQERKTDLTNIGQTALSLVKAYGTLAES 64 S +L L + LL + +SAF R+ + ERK L + + A +VK+Y + Sbjct: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADVAA 62 Query: 65 GALSKEEAQQRAKAAIKSLRYGTDGYFSISTSQQIIVMHPIKTELDGKDLTNFKDPAGTN 124 G +SKEEAQ+ A I ++RY D Y I S+ +++M P + GK++ + KD G Sbjct: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 Query: 125 LFVEISKAGSKPGGSFVSYL--WPKVGAAEPVPKTSFVIAYQPWDWNLTTGAYMDDINAA 182 +VE+ K G + FV Y+ P + PK S+V+ Q WDW + TG ++ D+ A Sbjct: 123 YYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQAQ 182 Query: 183 FMGTLTRMAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQ 242 F L R+ + VV + +++ I R I ++GG+PA A ++A RIA GDLT + T+ Sbjct: 183 FRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTR 242 Query: 243 PGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEET 302 PGD SLLYA+ MR+ L I I+ I + EIA GNLDLS RTE+QAGSL T Sbjct: 243 PGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATT 302 Query: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADII 362 AS M+ LTATVKQNADNARQA QLA SAS++A +GG VVGQVVQTMEGIT SSRKIADII Sbjct: 303 ASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 Query: 423 AKVDSGSKLVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 +V SGS V +AG TM EVVA+VR +TDIVGEIS+AS+EQ GI +V AI +MD+ TQ Sbjct: 423 QRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQ 482 Query: 483 QNAALVEQAAAAAQSLQDQAATLAGLVGRFQIDGSQAHA--VQAAPTAAVKSAASKPAAR 540 QNAALVEQAAAAA SL++QA L V F++DG + + V ++ A +A + Sbjct: 483 QNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASSLATATATATPTAVRK 542 Query: 541 PTTTAAPSPAQRKPVAAHPAIAAPKAAAPKAAAAPTAKAEAPATKAAGKSASRLPAGEDE 600 AA A KP+A P AAP A A A A A AA PAG D+ Sbjct: 543 APAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKAL----PAG-DD 597 Query: 601 GDWETF 606 GDWETF Sbjct: 598 GDWETF 603 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/319 (68%), Positives = 259/319 (81%) Query: 202 VALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQSSLLYAVRGMRDSLL 261 + + +++ RG+L+ +GG+P AA++A +IA GDLT N+ T+ GD SSLL+A++ MRDSL+ Sbjct: 200 ILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLV 259 Query: 262 STIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELTATVKQNADNAR 321 S +A ++ TI AS EIA GNLDLS RTEQQA SLEETASAMEEL TVKQNADNA+ Sbjct: 260 SIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAK 319 Query: 322 QANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAFQTNILALNAAV 381 QA+QLA SASEVA QGG VV QVV TM+GI SSRKI DII VIDGIAFQTNILALNAAV Sbjct: 320 QASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAV 379 Query: 382 EAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSKLVEQAGTTMTE 441 EAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI LI+DSV++++ GS LVEQAG TM Sbjct: 380 EAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMEN 439 Query: 442 VVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSLQDQ 501 VV SV+RVTD+V EIS ASQEQS GI +V AIT MDE TQQN+ALVE+AAAAA S+++Q Sbjct: 440 VVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQ 499 Query: 502 AATLAGLVGRFQIDGSQAH 520 A L+GLV F++D QA Sbjct: 500 AGALSGLVATFRLDAQQAR 518 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust. Identities = 227/376 (60%), Positives = 286/376 (76%), Gaps = 13/376 (3%) Query: 156 KTSFVIAYQPWDWNLTTGAYMDD-IN------AAFMGTLTRMAILF----AVVAAALVAL 204 K ++ + W L A ++D +N +A + RM +L VV A L A Sbjct: 153 KEQYLPVQKSWQVELKALAALEDQLNKEAAEASAVAYSRARMLMLLISAIGVVTAVLAAF 212 Query: 205 VIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQSSLLYAVRGMRDSLLSTI 264 + R +LR +GG+P A ++A +IA+GDL IDT+ GD SL+ A+R MRD L + + Sbjct: 213 WL--TRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIV 270 Query: 265 ANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELTATVKQNADNARQAN 324 A ++ + TI +AS EIARGNLDLSGRTEQQAG+LEETAS+ME+L +TVKQNA+NA QAN Sbjct: 271 AEVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQAN 330 Query: 325 QLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAFQTNILALNAAVEAA 384 LA +AS+VA+QGGS+V QVVQTM+ I SS+K+ADI+ VIDGIAFQTNILALNAAVEAA Sbjct: 331 DLALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAA 390 Query: 385 RAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSKLVEQAGTTMTEVVA 444 RAGEQGRGFAVVASEVRSLAQRSASAAKEIK LI DSV KV++GSKLVEQAG+TM ++V Sbjct: 391 RAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVT 450 Query: 445 SVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSLQDQAAT 504 S+RRVTD++ EI+ A++EQS+GI +V AI Q+D+ TQQNAALVEQAAAAA+SLQ+QAA Sbjct: 451 SIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAG 510 Query: 505 LAGLVGRFQIDGSQAH 520 L LV F++D +QAH Sbjct: 511 LQQLVSVFRLDAAQAH 526 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,095,010 Number of extensions: 33838 Number of successful extensions: 417 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 233 Number of HSP's successfully gapped: 72 Length of query: 606 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 515 Effective length of database: 1,188,985 Effective search space: 612327275 Effective search space used: 612327275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)