BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3193.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312528|ref|YP_003776620.1| lysophospholipase [Herbaspirill...   483   e-138
gi|300309425|ref|YP_003773517.1| lysophospholipase [Herbaspirill...    84   1e-17

>gi|300312528|ref|YP_003776620.1| lysophospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 282

 Score =  483 bits (1244), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/274 (86%), Positives = 252/274 (91%)

Query: 7   PQEHWIDAADGTRLFCRDWLLPGATAAVQMVHGLGEHGGRYAALAQLFNEAGLSVRICDH 66
           PQEHWIDA DGTRLFCRDWLLPGATAAVQMVHGLGEHGGRY +LA+LFNEAGLSVRICD 
Sbjct: 7   PQEHWIDADDGTRLFCRDWLLPGATAAVQMVHGLGEHGGRYFSLARLFNEAGLSVRICDQ 66

Query: 67  RGHGNSGGRQGSLIQPDDLLRDLKQSFDDFSRRTLCTPLLFGHSMGGLVAARFATGGFSP 126
           RGHGNSGG QGSLI+PDDLLRDLK SFDDFSRRT C P+LFGHSMGGLVAARFATGG+SP
Sbjct: 67  RGHGNSGGVQGSLIRPDDLLRDLKLSFDDFSRRTECVPVLFGHSMGGLVAARFATGGYSP 126

Query: 127 VRALALSSPALALDLAGWQQVLLKLSTAIAPGLALPTALPASRSSHDPHQVQAYRQDPLN 186
           VRALALSSPALALD+ GWQ++LL +STAIAPGLALPTALPASR SHDPH+V+AYR+DPLN
Sbjct: 127 VRALALSSPALALDMKGWQKLLLAVSTAIAPGLALPTALPASRISHDPHEVRAYRKDPLN 186

Query: 187 HGKISARMLNFMLDAMRQAARDAVQFTRPVLLQVAGDDAFVAPRGSRAFFDALPGPRKTL 246
           HGKI+ RML+FMLDAMRQ  R+A QFTRPVLLQVAGDDAFVAPRGSRAFFDALP  RKTL
Sbjct: 187 HGKIAPRMLHFMLDAMRQVEREAGQFTRPVLLQVAGDDAFVAPRGSRAFFDALPSGRKTL 246

Query: 247 HWYDAAYHEIFNEEASLREQVMHDLRQWLAQLPA 280
           HWY+ AYHEIFNEEASLR Q M DLR WLAQL A
Sbjct: 247 HWYEHAYHEIFNEEASLRAQAMQDLRNWLAQLSA 280


>gi|300309425|ref|YP_003773517.1| lysophospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 583

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 108/262 (41%), Gaps = 8/262 (3%)

Query: 6   PPQEHWIDAADGTRLFCRDWLLPGAT--AAVQMVHGLGEHGGRYAALAQLFNEAGLSVRI 63
           P QEH     D   LF R W         AV M H   EHGGR A L    +        
Sbjct: 4   PVQEHQFTTHDDQTLFYRRWPATATERRGAVVMFHRGHEHGGRMAHLVDELDLPDFDFYA 63

Query: 64  CDHRGHGNSGGRQGSLIQPDDLLRDLKQSFDDFSRRTLCTP----LLFGHSMGGLVAARF 119
            D RGHG S G +G      D +RD+ Q+F    R+          +   S+G ++ + +
Sbjct: 64  WDARGHGRSPGPRGYSPSFADSVRDV-QTFIGHLRQQWQLAEEDLAVLAQSVGAVLVSTW 122

Query: 120 ATGGFSPVRALALSSPALALDL-AGWQQVLLKLSTAIAPGLALPTALPASRSSHDPHQVQ 178
           A      VR L L+SPA  + L   + +  L L   +     + + + A   +HDP +  
Sbjct: 123 AHDYAPRVRCLVLASPAFKVKLYVPFARPGLALQQKLRGNFFVNSYVKAKYLTHDPARQA 182

Query: 179 AYRQDPLNHGKISARMLNFMLDAMRQAARDAVQFTRPVLLQVAGDDAFVAPRGSRAFFDA 238
           +Y  DPL    IS  +L  + +A  +   DA   T P  L ++G D  V       FFD 
Sbjct: 183 SYDSDPLISRPISVNILLALYEAAERVVADAQAITIPTQLLISGADWVVHHGPQHDFFDR 242

Query: 239 LPGPRKTLHWYDAAYHEIFNEE 260
           L    K  H     YH+ F E+
Sbjct: 243 LGTTTKEKHVLPGFYHDTFGEK 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 910,180
Number of extensions: 36791
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)