BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3190.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312523|ref|YP_003776615.1| cation transport regulator prot...   332   1e-92

>gi|300312523|ref|YP_003776615.1| cation transport regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  332 bits (851), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 162/196 (82%), Positives = 172/196 (87%), Gaps = 1/196 (0%)

Query: 1   MSVNTIAINRQMSHFDDHASLWLFGYGSIIFKADFPYLERRPAHIKGWARRFWQASHDHR 60
           MSVNTI +NRQM HFDDHAS+WLFGYGSIIFKADFPYLERRPAHIKGWARRFWQ SHDHR
Sbjct: 1   MSVNTIDLNRQMRHFDDHASVWLFGYGSIIFKADFPYLERRPAHIKGWARRFWQGSHDHR 60

Query: 61  GTPDAPGRVVTLVPQAGAICAGMAYLITPEVFAHLDHREKNGYLRLATPISFEDGEQPVE 120
           GT +APGRVVTLV Q  A+C GMAYLITPEVFAHLDHREKNGYLRL TPI F  G Q  E
Sbjct: 61  GTAEAPGRVVTLVAQEDAVCEGMAYLITPEVFAHLDHREKNGYLRLVTPILFGSG-QSAE 119

Query: 121 GLIYIAAEDNAAFAGPASEAEIARQIAGAVGPSGRNSEYLLKLAQALRELGAEDRHVFDI 180
           GLIYIA+E+N AFAGPASE EIARQIA A GPSGRNSEYLLKLAQALRELGA+DRHVF+I
Sbjct: 120 GLIYIASEENEAFAGPASELEIARQIAHAAGPSGRNSEYLLKLAQALRELGAQDRHVFEI 179

Query: 181 ERHLLQLAPQTAMLSS 196
           E HLLQL P  A+ +S
Sbjct: 180 EHHLLQLDPGAALPAS 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 707,954
Number of extensions: 31140
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)