BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3177.p
         (114 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310247|ref|YP_003774339.1| hypothetical protein Hsero_0914...   117   3e-28

>gi|300310247|ref|YP_003774339.1| hypothetical protein Hsero_0914
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  117 bits (293), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 17  KKLQQLWRAEKVLEAVGMPLEDWCPPADTPENSLKNRAFSKDGPTEAAIAIFEEAERASP 76
           + L+QLW+   +L+ +GMPLEDWCPPADTP+N+ +N AF K+GP+ AA+AIF E E+A P
Sbjct: 19  EHLKQLWQVAMLLDTIGMPLEDWCPPADTPDNARRNVAFDKNGPSPAAVAIFHEEEKADP 78

Query: 77  NENYRALGVWNGYEGNGGAAMRRLHFLTVIATIHT 111
           +E +R LGVWNG E +GGA +  LH L+ IA+ H+
Sbjct: 79  SEKFRILGVWNGKEDDGGAVL--LHKLS-IASNHS 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 345,562
Number of extensions: 11004
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 41
Effective length of database: 1,274,215
Effective search space: 52242815
Effective search space used: 52242815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)