BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3174.p (155 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 205 1e-54 gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 96 1e-21 gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 91 6e-20 gi|300311884|ref|YP_003775976.1| two component response regulato... 65 3e-12 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 61 5e-11 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 205 bits (522), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 98/132 (74%), Positives = 112/132 (84%), Gaps = 1/132 (0%) Query: 1 MKPPIILMIESNGEAVELARFALWRHNFHCVLQWIDEADIATESLLQHGRRESDSELPRM 60 M+PPIILMIESNGEAVELARFALWR NFHCVLQW DEAD A + LL H R D+ LP + Sbjct: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLL-HRHRLDDARLPDL 59 Query: 61 IFLDPGMMENNGLGFIQAMKAGRSTRAVPIVVFPDSDYPPEMPELIDAGAVEYLLKPETA 120 I LDPGMMENNG+ FI AMKAGR TR++P+VVFPDSDYPPEMP+L++AGA YLLKPETA Sbjct: 60 ILLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETA 119 Query: 121 QQFMQAVVDRAR 132 Q+MQAVV+ A+ Sbjct: 120 PQYMQAVVECAQ 131 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 95.9 bits (237), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 2/136 (1%) Query: 1 MKPPIILMIESNGEAVELARFALWRHNFHCVLQWIDEADIATESLLQHGRRESDSELPRM 60 M P I+MI+ + EA ELARFALWR HC + + A LL GRR D P + Sbjct: 13 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLS-GRRSGDCATPSL 71 Query: 61 IFLDPGMMENNGLGFIQAMKAGRSTRAVPIVVFPDSDYPPEMPELIDAGAVEYLLKPETA 120 I L+ M +GL ++ ++A P+VVFP D E E +DAGA YL KP Sbjct: 72 ILLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGER-EALDAGATAYLPKPIDG 130 Query: 121 QQFMQAVVDRARYWSD 136 +++ + VV+ W D Sbjct: 131 ERYARCVVEMVERWCD 146 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 90.5 bits (223), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 75/134 (55%) Query: 1 MKPPIILMIESNGEAVELARFALWRHNFHCVLQWIDEADIATESLLQHGRRESDSELPRM 60 M P ILM++ + E+VELARF LWR+ C W ++A+ A +SL R ++LP + Sbjct: 1 MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60 Query: 61 IFLDPGMMENNGLGFIQAMKAGRSTRAVPIVVFPDSDYPPEMPELIDAGAVEYLLKPETA 120 I L+P + GL + ++A TRA+P+V+F S + AGA +YL+KP A Sbjct: 61 ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120 Query: 121 QQFMQAVVDRARYW 134 + FM+ V R W Sbjct: 121 RAFMELVSQTVRRW 134 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 65.1 bits (157), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%) Query: 6 ILMIESNGEAVELARFALWRHNFHCVLQWIDEADIATESLLQHGRRESDSELPRMIFLDP 65 I++++ + E EL R AL L W +A++A E Q + P +I LD Sbjct: 8 IILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLILLDL 67 Query: 66 GMMENNGLGFIQAMKAGRSTRAVPIVVFPDSDYPPEMPELIDAGAVEYLLKPETAQQFMQ 125 + +G F++ +K+ +T +P+V+F SD ++ + + GA Y++K ++FM Sbjct: 68 NLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMG 127 Query: 126 AVVDRARYWSDRRRRRRTTKAA 147 VVD YW +R R R + A Sbjct: 128 TVVDTGIYWRNRNRPARNEEGA 149 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 60.8 bits (146), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 4 PIILMIESNGEAVELARFALWRHNFHCVLQWIDEADIATESLLQHGRRESDSELPRMIFL 63 P IL+I+++ +A+E ARFALWR + C ++W D+A++A SLL + + P +I L Sbjct: 8 PRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQ-PTLILL 66 Query: 64 DP-GMMENNGLGFIQAMKAGRSTRAVPIVVFPDSDYPPEMPELIDAGAVEYLLKPETAQQ 122 DP G ++ + +P+V+F S + D + Y KP Sbjct: 67 DPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQD-NRIWYAAKPARPAD 125 Query: 123 FMQAVV 128 +M+ V Sbjct: 126 YMELVT 131 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 480,344 Number of extensions: 17747 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 5 Length of query: 155 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 77 Effective length of database: 1,250,540 Effective search space: 96291580 Effective search space used: 96291580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)