BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3173.p (400 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 755 0.0 gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 330 1e-91 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 77 3e-15 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 72 9e-14 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/400 (89%), Positives = 379/400 (94%) Query: 1 MNAPLKTSASEPTKQTLDILKTLIGFNTISRESNLGLIEWVRDYLERYGATTRLTYDTQR 60 MNA L T+AS+PT+QTLDIL TLIGFNT+SRESNLGLIEWVRD+LER+GA TRLTYD +R Sbjct: 1 MNASLTTAASQPTRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAER 60 Query: 61 RKANLFATLGDAGPGRFGTVFSGHTDVVPVTGQNWDTDPFLAHVADGKLFGRGACDMKGF 120 RKANLFATLGDAGPGRFGTVFSGHTDVVPVTGQ WDTDPF+AHVADGKLFGRGACDMKGF Sbjct: 61 RKANLFATLGDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGF 120 Query: 121 IAVCLARLPAIAQDRLHTPLHFSFSYDEEVGCLGVRELLADLQRNDIKPTGVIIGEPTMM 180 IA+C+ARLPAI RLHTPLHFSFSYDEEVGCLGVRELLADLQ+NDI+PTGVIIGEPTMM Sbjct: 121 IAICMARLPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMM 180 Query: 181 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRHSEVQDYDF 240 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSID+AAMMQLKIREIALRVRHS VQD DF Sbjct: 181 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDF 240 Query: 241 DVPYSSIVTTLSNGGNAPNIIPDKAEFVFEHRFLPGIDPGEVFEEVKRYAEQEVLPQMHI 300 DVPYSSI TTL++GGNAPNIIPDKAEFVFEHRFLPGIDP EVFEEVK YAEQE+LPQM I Sbjct: 241 DVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRI 300 Query: 301 EGAQGRIEFETLTAYPGMSTSPDDPLVSSALRILGSERARKVGFGTEGGLFGQAGMPAVI 360 +G QGRIEFETLT+YPGM T DDPLV+SALRILGSERARKVGFGTEGGLFGQAGMPAVI Sbjct: 301 DGVQGRIEFETLTSYPGMCTPADDPLVTSALRILGSERARKVGFGTEGGLFGQAGMPAVI 360 Query: 361 CGPGDIVHAHKPNEFVTLEQLARCESFFDNFIASAHLKPV 400 CGPGDI HAHKPNEFVTLEQLARCE FFDNFIASAHL+PV Sbjct: 361 CGPGDIAHAHKPNEFVTLEQLARCERFFDNFIASAHLQPV 400 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 330 bits (845), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 168/380 (44%), Positives = 229/380 (60%), Gaps = 7/380 (1%) Query: 15 QTLDILKTLIGFNTISRESNLGLIEWVRDYLERYGATTRLTYDTQRRKANLFATL-GDAG 73 T L+TL+ F+T SR SNL LI VRD L++ G + L ++ + KANLFATL AG Sbjct: 7 NTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATAG 66 Query: 74 P----GRFGTVFSGHTDVVPVTGQNWDTDPFLAHVADGKLFGRGACDMKGFIAVCLARLP 129 P G V SGHTDVVPV GQ WDTDPF DG L+ RG+CDMKGFIA LA +P Sbjct: 67 PHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALVP 126 Query: 130 A-IAQDRLHTPLHFSFSYDEEVGCLGVRELLADLQRNDIKPTGVIIGEPTMMQPVIAHKG 188 +A R+ P+H +FS+DEE+GC+G +L ++ + IK G ++GEPT M V+AHKG Sbjct: 127 EYLAMPRVK-PIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 185 Query: 189 KRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRHSEVQDYDFDVPYSSIV 248 + C VHG +AHSS G N+I++AA + IR+ A + + D FDVP+S++ Sbjct: 186 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT 245 Query: 249 TTLSNGGNAPNIIPDKAEFVFEHRFLPGIDPGEVFEEVKRYAEQEVLPQMHIEGAQGRIE 308 T GG A N IP+ EF +E R LPG+ ++ ++ +Y + +LP+M E R+E Sbjct: 246 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVE 305 Query: 309 FETLTAYPGMSTSPDDPLVSSALRILGSERARKVGFGTEGGLFGQAGMPAVICGPGDIVH 368 + P + + + G + RKV +GTE GLF Q G+P ++CGPGDI + Sbjct: 306 IDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIGN 365 Query: 369 AHKPNEFVTLEQLARCESFF 388 AHKPNEFVTL Q+ CE F Sbjct: 366 AHKPNEFVTLAQMEHCEQFL 385 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 42/335 (12%) Query: 70 GDAGPGRFGTVFSGHTDVVPVTGQNWDTDPFLAHVADGKLFGRGACDMKGFIAVCL--AR 127 GD GP + H DVVP G+ W DP+ +ADG+++GR A K A L R Sbjct: 86 GDGGPT---LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATR 141 Query: 128 LPAIAQDRLHTPLHFSFSYDEEVGCLGVRELLAD--LQRNDIKPTGVIIGEPTMMQPVIA 185 L + F+YDEE G L L + L R D ++ V A Sbjct: 142 ALEAVGASLRGGVELHFTYDEEFGGLLGPGWLLEQKLTRPDY-----VLAAGFSYNVVTA 196 Query: 186 HKGKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRHSEVQDYDFDVPYS 245 H + +VHG A H S P G +++ A + I ++ E++ + + Sbjct: 197 HNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPGLK--EIRSAIPGITHP 254 Query: 246 SIVTTLSNGGNAPNIIPDKAEFVFEHRFLPGIDPGEVFEEVKRYAEQEV--LPQMHIEGA 303 +++ +GG N++P K + R +P DP +V V++ E V LP + +E Sbjct: 255 TMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAVAGLPGIRVE-- 312 Query: 304 QGRIEFETLTAYPGMSTSPDDPLVSSALRILGSERARKV----------GFGTEGGLFGQ 353 L A + LV S LR AR+V T+ L+G+ Sbjct: 313 ----IRRLLLARALRPLPGHEKLVESLLR-----NAREVMGETLTTNGSALYTDARLYGE 363 Query: 354 AGMPAVICGPGDIV----HAHKPNEFVTLEQLARC 384 G+P V+ G G +A + +E + L+ L + Sbjct: 364 QGIPVVLFGAGPRTLMESNAKQADENLALDDLRKA 398 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 99/221 (44%), Gaps = 22/221 (9%) Query: 64 NLFATLGDAGPGRFGTVFSGHTDVVPVTG--QNWDTDPFLAHVADGKLFGRGACDMKGFI 121 NL+A G A P VF+GHTDVVP TG + W + PF + +G+L+GRGA DMK I Sbjct: 51 NLWARKGTAQPL---VVFAGHTDVVP-TGPLEKWQSHPFQPTLREGRLYGRGASDMKTSI 106 Query: 122 A---VCLARLPAIAQDRLHTPLHFSFSYDEEVGCL-GVRELLADLQRNDIKPTGVIIGEP 177 A V A D + + F + DEE + G + L+ + I+GEP Sbjct: 107 AAMVVACEEFTAAHPDHKGS-IGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEP 165 Query: 178 TMMQPV-----IAHKGKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRH 232 T + + +G S + +V G H + P L N I AA +A V Sbjct: 166 TSAKTLGDMIKNGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAA------PALAELVAE 219 Query: 233 SEVQDYDFDVPYSSIVTTLSNGGNAPNIIPDKAEFVFEHRF 273 ++ +P S ++ + G A N+IP + F RF Sbjct: 220 QWDAGNEYYLPTSWQISNIHGGTGASNVIPGEVMIDFNFRF 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,377,859 Number of extensions: 62573 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 4 Length of query: 400 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 313 Effective length of database: 1,207,925 Effective search space: 378080525 Effective search space used: 378080525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)