BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3172.p (385 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herb... 704 0.0 gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembr... 329 2e-91 gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux ... 127 1e-30 gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herb... 98 9e-22 gi|300312340|ref|YP_003776432.1| transporter transmembrane prote... 62 7e-11 >gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 385 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/385 (92%), Positives = 370/385 (96%) Query: 1 MNWPLFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAI 60 MNWPLFALAVAAFGIGTTEFVIMGLLPDVA DL V+APAAGMLVSGYALGVAAGAPILAI Sbjct: 1 MNWPLFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAI 60 Query: 61 LTAKWPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELV 120 LTAKWPRKQALVGLMCLFILGNVLCA+APNY FLMVARVVTAFCHAAFFGIGSVVAAELV Sbjct: 61 LTAKWPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELV 120 Query: 121 PPQKRAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPR 180 PQKRAQAVALMFTGLTVANILGVPLGTAFGH AGWR+TF AVT IG LAA MLWTMLP+ Sbjct: 121 APQKRAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPK 180 Query: 181 HLPMQGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWV 240 +PMQ GNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILL+VTGF+ Q+ESWV Sbjct: 181 KIPMQAGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWV 240 Query: 241 LLLFGAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWGA 300 LLLFGAGITVGGLVGGKLADWKLMPVMC VFLCIA+VLGLFS TSHYKWPTLATMFAWGA Sbjct: 241 LLLFGAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSITSHYKWPTLATMFAWGA 300 Query: 301 FAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTDLPLIG 360 FAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNA+GAW+GGLAISAGLPLTDLPLIG Sbjct: 301 FAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISAGLPLTDLPLIG 360 Query: 361 SVFALLGLATVAFSASLDKRVRAPA 385 + FALLGLATVAFSASLDKRVRAPA Sbjct: 361 AFFALLGLATVAFSASLDKRVRAPA 385 >gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 329 bits (844), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 189/374 (50%), Positives = 247/374 (66%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAILTAK 64 L+AL ++AF IGTTEFVIMGLLP+VA +L VS +AG+LV+GYALGV GAP+L T + Sbjct: 5 LWALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPLLTATTGR 64 Query: 65 WPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPPQK 124 PRK LV LM +F++GN+ CA+AP+Y LM+ RVV +F H AFFG+GSVVA LVP +K Sbjct: 65 LPRKTLLVALMVVFVVGNLACAIAPDYTTLMIGRVVASFAHGAFFGVGSVVATSLVPKEK 124 Query: 125 RAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPRHLPM 184 +A A+ALMFTGLTVAN+LGVP GT G GWRATFWAVT IG +A ++PR Sbjct: 125 QASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTVIGVIALAATAVLVPRSQGG 184 Query: 185 QGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWVLLLF 244 + + +E R ++ +V L LL + L +F+ TYIA IL +++GF A S +LLLF Sbjct: 185 EETDFGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPILTDLSGFPASAVSPILLLF 244 Query: 245 GAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWGAFAFA 304 G G+ +G L GGKLAD KLM + + +A VL LF T K + + G AFA Sbjct: 245 GLGLVIGNLAGGKLADKKLMATLLGSLVLLAAVLVLFGLTVDNKVAAIIGVGLMGMAAFA 304 Query: 305 VVPGAQIRVLDTARGAPNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTDLPLIGSVFA 364 VP Q+RVL+ A GAPNLAS+ N AFNLGNA+GAW+GG+ I G L +P + ++ Sbjct: 305 TVPPLQMRVLEKATGAPNLASSANIAAFNLGNAAGAWLGGVTIDHGPGLHAVPYVAALLP 364 Query: 365 LLGLATVAFSASLD 378 L G+ S +D Sbjct: 365 LAGIVVALVSWKMD 378 >gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 117/357 (32%), Positives = 178/357 (49%), Gaps = 27/357 (7%) Query: 8 LAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAILTAKWPR 67 LA+ F IGT F+I LLP +A D +S P LV + L +A +PI +L+A R Sbjct: 29 LALGTFAIGTEGFMIAPLLPRMAADFGMSVPMVASLVVIFTLVLALSSPISTVLSAAMNR 88 Query: 68 KQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPPQKRAQ 127 ++ L+ M F N+L A + ++ L+VAR++ A + S +A +V P +R + Sbjct: 89 RRVLIAAMTAFTAANLLAACSSSFTGLLVARLLMAVAAGLYTPNASALAGAMVAPGQRGR 148 Query: 128 AVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPR----HLP 183 A+A++ G+T + LG+PLG GH GWRATF AV+ +GA+A + +PR HL Sbjct: 149 ALAIVSGGMTSPSALGLPLGAVVGHAFGWRATFLAVSAMGAVALAGILLGVPRQAGAHLH 208 Query: 184 MQGGNIFQEFRSII-DTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWVLL 242 + G +E ++I +VQ L + L S+ ++ YIA L +V F S + Sbjct: 209 VAG---LRERMAVIGQPQVQRLLAVTLLWSVGAYAAYPYIAPYLSHVLSFGESRISLTVS 265 Query: 243 LFGAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKW-------PTLATM 295 L+GA VG VGG L D + V L + ++L ++ + P L + Sbjct: 266 LWGAAAAVGVSVGGTLNDRYGSARVVRVSLLL-LMLSFWTLAAATALPPPLALGPVLLAV 324 Query: 296 FAWGAFAFAVVPGAQIRVLDTARGAPNLA--------STLNQGAFNLGNASGAWIGG 344 WG +A P R++ GAP A STL G F+LG+A+GA I G Sbjct: 325 VVWGFSVWAFFPAQMARLIGA--GAPAQAPVALSLNTSTLYLG-FSLGSAAGAGILG 378 >gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 422 Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 5/244 (2%) Query: 2 NWP-LFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAI 60 NW + +LA+ F + T EF+ LL +A DL VS AAG V+ A+ A AP + + Sbjct: 35 NWSGIASLALGVFSLVTAEFLPASLLTAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPL 94 Query: 61 LTAKWPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELV 120 LT RK+ ++ L L ++ N+L APN L+VARV+ F+ + + +A LV Sbjct: 95 LTRNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLV 154 Query: 121 PPQKRAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPR 180 P A+A++L+ TG++VA + P+G G++ GWR+ F A + +A + W +PR Sbjct: 155 PDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIPR 214 Query: 181 HLPMQGGN--IFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEES 238 P + + E D RV L + ++ F+ TYI ++ +T S S Sbjct: 215 LPPKDHPSLKVLAELLGRKDVRVALLAVLLVVS--GHFAGFTYIRPLMEQITHMSVTTIS 272 Query: 239 WVLL 242 VLL Sbjct: 273 AVLL 276 >gi|300312340|ref|YP_003776432.1| transporter transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 421 Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 32 DLKVSAPAAGMLVSGYALGVAAGAPILAILTAKWPRKQALVGLMCLFILGNVLCAMAPNY 91 ++++ G++VS YA A + A ++ RK+ L+ F+LG V C +A ++ Sbjct: 51 SMQITPQQFGLVVSAYAFSAGASGLLTAGFADRFDRKRLLLFFYGGFVLGTVWCGLAQSF 110 Query: 92 NFLMVARVVTAFCHAAFFGIGSVVAAELVPPQKRAQAVALMFTGLTVANILGVPLGTAFG 151 L++AR+VT I +A +L P R + + ++ T + +LG+P+G Sbjct: 111 ESLLLARIVTGLFGGVIGSITLAIATDLFAPHLRGRVMGVIQTSFAASQVLGIPIGLYLS 170 Query: 152 HVAGWRATFWAVTGIGALAATMLWTMLPRHLPMQGGNIFQEFRS 195 + W F A+ +G LA ++ +L R P+ G ++ S Sbjct: 171 NRWNWHVPFLAMAALG-LAGGLV--VLVRMQPVDGHLTLKQEHS 211 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,193,212 Number of extensions: 50955 Number of successful extensions: 412 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 408 Number of HSP's successfully gapped: 13 Length of query: 385 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 298 Effective length of database: 1,207,925 Effective search space: 359961650 Effective search space used: 359961650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)