BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3170.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312507|ref|YP_003776599.1| drug/metabolite transporter (DM...   444   e-126

>gi|300312507|ref|YP_003776599.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  444 bits (1142), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/291 (80%), Positives = 261/291 (89%)

Query: 1   MESKKATLIGLSAVLLWSAIVGLIRGVSQHLGATGGAAAIYTVASVILWMSVGFPRLSRF 60
           M SKKATL+GL+AV+LWSAIVGLIRGVS+HLGATGGAAAIYTVAS IL ++VG PRL  F
Sbjct: 1   MNSKKATLVGLTAVVLWSAIVGLIRGVSEHLGATGGAAAIYTVASAILLLTVGMPRLRSF 60

Query: 61  PRKYLLWGSALFVAYELCLSLSIGYAHSARQAIEVGMVNYLWPTFTLVAAILFGGQRATL 120
           PR+YL WGS LFV+YELCLSLSIGYA++ARQAIEVGMVNYLWPTFTL AAILFG QRAT 
Sbjct: 61  PRRYLFWGSLLFVSYELCLSLSIGYANTARQAIEVGMVNYLWPTFTLTAAILFGKQRATW 120

Query: 121 LVVPGFVLSMLGICWVLGGEQGLDLAGMMANLQDNPLSYGLAFVGALIWAAYCTVTATLA 180
           L+ PGFVLSMLGICWVLGG+QGLD+AGM+ N++DNPLSYGLAF GALIWAAYCTVT  +A
Sbjct: 121 LMAPGFVLSMLGICWVLGGDQGLDVAGMLENIRDNPLSYGLAFAGALIWAAYCTVTTRIA 180

Query: 181 QGSNGVTPFFILVALALWGKFLLGDHAGELVLSLPALIYLVLAAAAMGLGYAAWNVGILH 240
            G NGVTPFF++VA+ LW K L G H  EL +SLPAL+YL+LAAAAMGLGYAAWNVGILH
Sbjct: 181 AGMNGVTPFFMMVAVVLWVKVLAGGHLAELSMSLPALVYLLLAAAAMGLGYAAWNVGILH 240

Query: 241 GNVTLLAGASYFIPVFSSALSALLLRAPLPASFWVGAALVCGGSILCWRAT 291
           GNVT+LAGASYFIPVFSSALSALLLR+PLP +FW+GA LVC GSILCW AT
Sbjct: 241 GNVTVLAGASYFIPVFSSALSALLLRSPLPGAFWIGAGLVCAGSILCWIAT 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 905,397
Number of extensions: 37136
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)