BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3166.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313307|ref|YP_003777399.1| gluconolactonase [Herbaspirillu...   487   e-139
gi|300313737|ref|YP_003777829.1| gluconolactonase [Herbaspirillu...    62   7e-11

>gi|300313307|ref|YP_003777399.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  487 bits (1254), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 229/299 (76%), Positives = 260/299 (86%)

Query: 15  PYEHLDPRFAALVVPSARLDCLHSGNRWTEGPVYLPATDEVIWSDIPNNRLMRWSEGAGA 74
           P++H D RF  +V+ +A++DCL++G RW EGPV+LPAT E+IWSDIPNNRLMRWSEGAGA
Sbjct: 7   PFQHFDARFRRMVIDTAQVDCLYTGCRWAEGPVWLPATQELIWSDIPNNRLMRWSEGAGA 66

Query: 75  GTFRQPSDYNNGNTLDREGRIIGCLHGARAVVRTEHDGSRTVLASHWQGKRLNSPNDVVV 134
           G FRQPS++NNGNTLDREGRI+GCLHG RAVVRTEHDGS T LASHWQGKRLNSPNDVVV
Sbjct: 67  GVFRQPSNFNNGNTLDREGRIVGCLHGGRAVVRTEHDGSITTLASHWQGKRLNSPNDVVV 126

Query: 135 KSDGSIWFTDPSYGIDSDYEGHKADSEIGGCHVYRIDAQSGQLTLVSDDFERPNGLAFSP 194
           KSDGSIWFTDP YGI+SDYEG++A SEIG C+VYRID  SG++++V+ D ERPNGLAFS 
Sbjct: 127 KSDGSIWFTDPDYGINSDYEGYQAQSEIGACNVYRIDGDSGEISIVASDLERPNGLAFST 186

Query: 195 DEKLLYIADTGRTHRPDGPHHIRVFEVGGDDRLSGSRVFATISPGLADGLRLDERGNVWT 254
           DE+ LYIADTG THR  GPHHIRVF+V     L    VFATI PGLADG RLD +GNVWT
Sbjct: 187 DERRLYIADTGLTHRAGGPHHIRVFDVVDGISLKVGEVFATIDPGLADGFRLDAQGNVWT 246

Query: 255 SAGDGVHCYAADGSLLGKILVPEVVSNVCFGGPRNNRLFITATSSLYAIYLAVNGARRP 313
           SAGDGVHCYA DG+LLGKIL+PEVVSNV FGGPR NRLFITAT+SLYA+YLAVNGA+RP
Sbjct: 247 SAGDGVHCYAPDGTLLGKILIPEVVSNVVFGGPRGNRLFITATTSLYAVYLAVNGAQRP 305


>gi|300313737|ref|YP_003777829.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 306

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 111/258 (43%), Gaps = 44/258 (17%)

Query: 58  SDIPNNRLMRWSEGAGAGTFRQPSDYNNGNTLDREGRIIGCLHGARAVVRTEHD-GSRTV 116
           +DIP  R+ R +         +   + NG  +D+ GRI+   +  R +V+ + D G+ T 
Sbjct: 58  TDIPYGRIFRITMDGQWELVTEYDGWPNGLKIDKTGRIVITDY-KRGLVQLDPDTGTVTP 116

Query: 117 LASHWQGKRLNSPNDVVVKSDGSIWFTDPSYGIDSDYEGHKADSEIGGCHVYRIDAQSGQ 176
           L      +     ND+V    G I+FTD         +G     +  G  VYR+ A  GQ
Sbjct: 117 LLETVGSEGFKGVNDLVFGPKGEIYFTD---------QGQTGLQDPTG-RVYRL-APDGQ 165

Query: 177 LTLVSDDFERPNGLAFSPDEKLLYIADT--GRTHRPDGPHHIRVFEVGGDDRLSGSRVFA 234
           LT + +    PNG+ + P    L +A T   +  R    H+  V +VG         VFA
Sbjct: 166 LTCLINTIPSPNGIVYDPALNHLLVAVTRAQQIWRIPLHHNGVVGKVG---------VFA 216

Query: 235 TISPGLA--DGLRLDERGNVWTSAGDGVHCYAADGSL--LGKILVPEV---------VSN 281
            +  G+A  DGL LD   N++ +       +   GS+  L K   P +          +N
Sbjct: 217 NLHGGMAGPDGLALDAESNLYIA-------HTGFGSIWRLSKFAEPLLRIRSSAGISTTN 269

Query: 282 VCFGGPRNNRLFITATSS 299
           + FGGP    LFIT + +
Sbjct: 270 LAFGGPDGKSLFITESQT 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,103,631
Number of extensions: 52289
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)